BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1609_D08_G15ZT.
seq
(500 letters)
Database: /phillip/Ncr/MgIFAFSall
2061 sequences; 785,635 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGMY004DB02F.B mgmy004dB02f.b 41 353 30 0.29
MGAP007BE07F.B mgap007bE07f.b 25 582 30 0.29
MGMY002CH05F.B mgmy002cH05f.b 25 548 28 1.2
MGAP007BH11F.B mgap007bH11f.b 18 584 28 1.2
MGAP007BB10F.B mgap007bB10f.b 17 590 28 1.2
MGMY006BB08F.B mgmy006bB08f.b 172 355 26 4.6
MGMY004DF01F.B mgmy004dF01f.b 30 408 26 4.6
MGMY004AC12F.B mgmy004aC12f.b 35 392 26 4.6
MGMY003DF04F.B mgmy003dF04f.b 86 465 26 4.6
MGMY003BH06F.B mgmy003bH06f.b 14 516 26 4.6
MGCM002DH01F.B mgcm002dH01f.b 21 535 26 4.6
MGAP010DH12F.B mgap010dH12f.b 149 572 26 4.6
MGAP008CH08F.B mgap008cH08f.b 25 584 26 4.6
MGAP007BH08F.B mgap007bH08f.b 48 703 26 4.6
>MGMY004DB02F.B mgmy004dB02f.b 41 353
Length = 292
Score = 30.2 bits (15), Expect = 0.29
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 33 tacctcgaaaatggc 47
|||||||||||||||
Sbjct: 217 tacctcgaaaatggc 231
>MGAP007BE07F.B mgap007bE07f.b 25 582
Length = 506
Score = 30.2 bits (15), Expect = 0.29
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 173 tccccaacatcacct 187
|||||||||||||||
Sbjct: 123 tccccaacatcacct 137
>MGMY002CH05F.B mgmy002cH05f.b 25 548
Length = 472
Score = 28.2 bits (14), Expect = 1.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 358 tccagcgctgccga 371
||||||||||||||
Sbjct: 468 tccagcgctgccga 455
>MGAP007BH11F.B mgap007bH11f.b 18 584
Length = 505
Score = 28.2 bits (14), Expect = 1.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 358 tccagcgctgccga 371
||||||||||||||
Sbjct: 488 tccagcgctgccga 475
>MGAP007BB10F.B mgap007bB10f.b 17 590
Length = 512
Score = 28.2 bits (14), Expect = 1.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 358 tccagcgctgccga 371
||||||||||||||
Sbjct: 497 tccagcgctgccga 484
>MGMY006BB08F.B mgmy006bB08f.b 172 355
Length = 183
Score = 26.3 bits (13), Expect = 4.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 242 cccacggccgggg 254
|||||||||||||
Sbjct: 66 cccacggccgggg 54
>MGMY004DF01F.B mgmy004dF01f.b 30 408
Length = 358
Score = 26.3 bits (13), Expect = 4.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 401 ccaaccccaaggc 413
|||||||||||||
Sbjct: 19 ccaaccccaaggc 31
>MGMY004AC12F.B mgmy004aC12f.b 35 392
Length = 308
Score = 26.3 bits (13), Expect = 4.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 425 atatccacgacca 437
|||||||||||||
Sbjct: 13 atatccacgacca 25
>MGMY003DF04F.B mgmy003dF04f.b 86 465
Length = 379
Score = 26.3 bits (13), Expect = 4.6
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 157 atggacggtcactttgt 173
|||| ||||||||||||
Sbjct: 269 atgggcggtcactttgt 285
>MGMY003BH06F.B mgmy003bH06f.b 14 516
Length = 305
Score = 26.3 bits (13), Expect = 4.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 257 cctttgattgtca 269
|||||||||||||
Sbjct: 157 cctttgattgtca 169
>MGCM002DH01F.B mgcm002dH01f.b 21 535
Length = 443
Score = 26.3 bits (13), Expect = 4.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 439 ggcttgttggctg 451
|||||||||||||
Sbjct: 103 ggcttgttggctg 91
>MGAP010DH12F.B mgap010dH12f.b 149 572
Length = 423
Score = 26.3 bits (13), Expect = 4.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 401 ccaaccccaaggc 413
|||||||||||||
Sbjct: 357 ccaaccccaaggc 369
>MGAP008CH08F.B mgap008cH08f.b 25 584
Length = 516
Score = 26.3 bits (13), Expect = 4.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 401 ccaaccccaaggc 413
|||||||||||||
Sbjct: 414 ccaaccccaaggc 426
>MGAP007BH08F.B mgap007bH08f.b 48 703
Length = 603
Score = 26.3 bits (13), Expect = 4.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 142 ctccatgtcgaca 154
|||||||||||||
Sbjct: 204 ctccatgtcgaca 216
Database: /phillip/Ncr/MgIFAFSall
Posted date: Feb 13, 2002 12:25 PM
Number of letters in database: 785,635
Number of sequences in database: 2061
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 210
Number of Sequences: 2061
Number of extensions: 210
Number of successful extensions: 63
Number of sequences better than 10.0: 14
length of query: 500
length of database: 785,635
effective HSP length: 14
effective length of query: 486
effective length of database: 756,781
effective search space: 367795566
effective search space used: 367795566
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)