BLASTN 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1609_F09_K17ZT.
seq
         (502 letters)

Database: /phillip/Ncr/MgIFAFSall
           2061 sequences; 785,635 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

MGMY004DF07F.B mgmy004dF07f.b 41 416                                   28  1.2
MGMY002CA03F.B mgmy002cA03f.b 15 608                                   28  1.2
MGMY002AG02F.B mgmy002aG02f.b 2 537                                    26  4.6
MGCM002AB03F.B mgcm002aB03f.b 1 386                                    26  4.6
MGAP008CD03F.B mgap008cD03f.b 50 542                                   26  4.6
MGAP008CA05F.B mgap008cA05f.b 25 500                                   26  4.6

>MGMY004DF07F.B mgmy004dF07f.b 41 416
          Length = 368

 Score = 28.2 bits (14), Expect = 1.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 306 caaccagaggaggg 319
           ||||||||||||||
Sbjct: 269 caaccagaggaggg 256



>MGMY002CA03F.B mgmy002cA03f.b 15 608
          Length = 546

 Score = 28.2 bits (14), Expect = 1.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 46  ctgttgccaacagt 59
           ||||||||||||||
Sbjct: 276 ctgttgccaacagt 263



>MGMY002AG02F.B mgmy002aG02f.b 2 537
          Length = 479

 Score = 26.3 bits (13), Expect = 4.6
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                        
Query: 47  tgttgccaacagt 59
           |||||||||||||
Sbjct: 364 tgttgccaacagt 376



>MGCM002AB03F.B mgcm002aB03f.b 1 386
          Length = 333

 Score = 26.3 bits (13), Expect = 4.6
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                        
Query: 343 gcaccaatgaccc 355
           |||||||||||||
Sbjct: 176 gcaccaatgaccc 164



>MGAP008CD03F.B mgap008cD03f.b 50 542
          Length = 492

 Score = 26.3 bits (13), Expect = 4.6
 Identities = 16/17 (94%)
 Strand = Plus / Plus

                            
Query: 132 ggcgcaggccccctgac 148
           ||||| |||||||||||
Sbjct: 268 ggcgctggccccctgac 284



>MGAP008CA05F.B mgap008cA05f.b 25 500
          Length = 432

 Score = 26.3 bits (13), Expect = 4.6
 Identities = 16/17 (94%)
 Strand = Plus / Plus

                            
Query: 132 ggcgcaggccccctgac 148
           ||||| |||||||||||
Sbjct: 229 ggcgctggccccctgac 245



  Database: /phillip/Ncr/MgIFAFSall
    Posted date:  Feb 13, 2002 12:25 PM
  Number of letters in database: 785,635
  Number of sequences in database:  2061
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 167
Number of Sequences: 2061
Number of extensions: 167
Number of successful extensions: 40
Number of sequences better than 10.0: 6
length of query: 502
length of database: 785,635
effective HSP length: 14
effective length of query: 488
effective length of database: 756,781
effective search space: 369309128
effective search space used: 369309128
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)