BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1609_G02_M03ZT.
seq
(398 letters)
Database: /phillip/Ncr/MgIFAFSall
2061 sequences; 785,635 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGCM002AE12F.B mgcm002aE12f.b 3 347 26 3.6
MGCM002AC04F.B mgcm002aC04f.b 16 508 26 3.6
MGCM001DB11F.B mgcm001dB11f.b 22 413 26 3.6
MGAP010CF07F.B mgap010cF07f.b 37 480 26 3.6
>MGCM002AE12F.B mgcm002aE12f.b 3 347
Length = 289
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 124 tggagtccttgtc 136
|||||||||||||
Sbjct: 268 tggagtccttgtc 256
>MGCM002AC04F.B mgcm002aC04f.b 16 508
Length = 426
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 124 tggagtccttgtc 136
|||||||||||||
Sbjct: 267 tggagtccttgtc 255
>MGCM001DB11F.B mgcm001dB11f.b 22 413
Length = 324
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 124 tggagtccttgtc 136
|||||||||||||
Sbjct: 225 tggagtccttgtc 213
>MGAP010CF07F.B mgap010cF07f.b 37 480
Length = 403
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 63 tgaaaaggaacag 75
|||||||||||||
Sbjct: 310 tgaaaaggaacag 298
Database: /phillip/Ncr/MgIFAFSall
Posted date: Feb 13, 2002 12:25 PM
Number of letters in database: 785,635
Number of sequences in database: 2061
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 147
Number of Sequences: 2061
Number of extensions: 147
Number of successful extensions: 35
Number of sequences better than 10.0: 4
length of query: 398
length of database: 785,635
effective HSP length: 14
effective length of query: 384
effective length of database: 756,781
effective search space: 290603904
effective search space used: 290603904
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)