BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1609_H02_O03ZT.
seq
(461 letters)
Database: /phillip/Ncr/MgIFAFSall
2061 sequences; 785,635 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGMY004DH04F.B mgmy004dH04f.b 31 311 32 0.068
MGMY002AD12F.B mgmy002aD12f.b 29 545 32 0.068
MGMY001AB06F.B mgmy001aB06f.b 2 550 32 0.068
MGMY004CC05F.B mgmy004cC05f.b 49 465 30 0.27
MGCM002AE09F.B mgcm002aE09f.b 165 587 28 1.1
MGAP007CB01F.B mgap007cB01f.b 20 542 28 1.1
MGMY005CB12F.B mgmy005cB12f.b 24 546 26 4.2
MGMY003DB08F.B mgmy003dB08f.b 90 477 26 4.2
MGMY003AH02F.B mgmy003aH02f.b 2 534 26 4.2
MGMY001CF07F.B mgmy001cF07f.b 134 513 26 4.2
MGMY001AH06F.B mgmy001aH06f.b 3 359 26 4.2
MGCM002CF08F.B mgcm002cF08f.b 22 532 26 4.2
MGAP008DE11F.B mgap008dE11f.b 16 532 26 4.2
MGAP008DC10F.B mgap008dC10f.b 17 550 26 4.2
MGAP008DA03F.B mgap008dA03f.b 15 602 26 4.2
MGAP007CF02F.B mgap007cF02f.b 114 646 26 4.2
MGAP007BF01F.B mgap007bF01f.b 24 595 26 4.2
MGAP007AE10F.B mgap007aE10f.b 26 412 26 4.2
>MGMY004DH04F.B mgmy004dH04f.b 31 311
Length = 192
Score = 32.2 bits (16), Expect = 0.068
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 250 catctccaaggttgac 265
||||||||||||||||
Sbjct: 60 catctccaaggttgac 75
>MGMY002AD12F.B mgmy002aD12f.b 29 545
Length = 378
Score = 32.2 bits (16), Expect = 0.068
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 250 catctccaaggttgac 265
||||||||||||||||
Sbjct: 195 catctccaaggttgac 210
>MGMY001AB06F.B mgmy001aB06f.b 2 550
Length = 512
Score = 32.2 bits (16), Expect = 0.068
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 250 catctccaaggttgac 265
||||||||||||||||
Sbjct: 392 catctccaaggttgac 407
>MGMY004CC05F.B mgmy004cC05f.b 49 465
Length = 416
Score = 30.2 bits (15), Expect = 0.27
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 43 cgttggctgcgcctt 57
|||||||||||||||
Sbjct: 11 cgttggctgcgcctt 25
>MGCM002AE09F.B mgcm002aE09f.b 165 587
Length = 379
Score = 28.2 bits (14), Expect = 1.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 360 ccgatggtgacacc 373
||||||||||||||
Sbjct: 186 ccgatggtgacacc 173
>MGAP007CB01F.B mgap007cB01f.b 20 542
Length = 457
Score = 28.2 bits (14), Expect = 1.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 119 tccgccgacgagaa 132
||||||||||||||
Sbjct: 354 tccgccgacgagaa 341
>MGMY005CB12F.B mgmy005cB12f.b 24 546
Length = 458
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 49 ctgcgccttggtg 61
|||||||||||||
Sbjct: 255 ctgcgccttggtg 243
>MGMY003DB08F.B mgmy003dB08f.b 90 477
Length = 387
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 78 ttgtccacgccgg 90
|||||||||||||
Sbjct: 300 ttgtccacgccgg 288
>MGMY003AH02F.B mgmy003aH02f.b 2 534
Length = 507
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 414 agaccaattgaga 426
|||||||||||||
Sbjct: 165 agaccaattgaga 153
>MGMY001CF07F.B mgmy001cF07f.b 134 513
Length = 379
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 122 gccgacgagaagg 134
|||||||||||||
Sbjct: 99 gccgacgagaagg 111
>MGMY001AH06F.B mgmy001aH06f.b 3 359
Length = 319
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 421 ttgagacaacctc 433
|||||||||||||
Sbjct: 47 ttgagacaacctc 35
>MGCM002CF08F.B mgcm002cF08f.b 22 532
Length = 439
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 1 tgtcaatctcgcc 13
|||||||||||||
Sbjct: 251 tgtcaatctcgcc 263
>MGAP008DE11F.B mgap008dE11f.b 16 532
Length = 425
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 351 gacccaggaccga 363
|||||||||||||
Sbjct: 158 gacccaggaccga 146
>MGAP008DC10F.B mgap008dC10f.b 17 550
Length = 467
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 304 tcttgcccccaaa 316
|||||||||||||
Sbjct: 9 tcttgcccccaaa 21
>MGAP008DA03F.B mgap008dA03f.b 15 602
Length = 520
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 211 tctccacaacaga 223
|||||||||||||
Sbjct: 256 tctccacaacaga 244
>MGAP007CF02F.B mgap007cF02f.b 114 646
Length = 532
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 234 tcgttgaccagag 246
|||||||||||||
Sbjct: 87 tcgttgaccagag 75
>MGAP007BF01F.B mgap007bF01f.b 24 595
Length = 519
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 239 gaccagagatgca 251
|||||||||||||
Sbjct: 305 gaccagagatgca 293
>MGAP007AE10F.B mgap007aE10f.b 26 412
Length = 334
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 120 ccgccgacgagaa 132
|||||||||||||
Sbjct: 130 ccgccgacgagaa 118
Database: /phillip/Ncr/MgIFAFSall
Posted date: Feb 13, 2002 12:25 PM
Number of letters in database: 785,635
Number of sequences in database: 2061
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 199
Number of Sequences: 2061
Number of extensions: 199
Number of successful extensions: 62
Number of sequences better than 10.0: 18
length of query: 461
length of database: 785,635
effective HSP length: 14
effective length of query: 447
effective length of database: 756,781
effective search space: 338281107
effective search space used: 338281107
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)