BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1609_H03_O05ZT.
seq
(499 letters)
Database: /phillip/Ncr/MgIFAFSall
2061 sequences; 785,635 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGAP007BC03F.B mgap007bC03f.b 27 479 30 0.29
MGMY006AC11F.B mgmy006aC11f.b 15 504 28 1.2
MGMY004AD10F.B mgmy004aD10f.b 34 590 28 1.2
MGMY003AD05F.B mgmy003aD05f.b 2 391 28 1.2
MGMY002AD10F.B mgmy002aD10f.b 46 382 28 1.2
MGCM002CC10F.B mgcm002cC10f.b 18 513 28 1.2
MGCM002CC03F.B mgcm002cC03f.b 21 530 28 1.2
MGCM002CB01F.B mgcm002cB01f.b 23 535 28 1.2
MGCM001DF01F.B mgcm001dF01f.b 1 381 28 1.2
MGCM001DB06F.B mgcm001dB06f.b 20 531 28 1.2
MGMY005AB06F.B mgmy005aB06f.b 237 419 26 4.6
MGMY004CC02F.B mgmy004cC02f.b 42 240 26 4.6
MGMY004AF09F.B mgmy004aF09f.b 24 586 26 4.6
MGMY002DC02F.B mgmy002dC02f.b 27 410 26 4.6
MGMY002DB10F.B mgmy002dB10f.b 15 426 26 4.6
MGMY002BA02F.B mgmy002bA02f.b 0 503 26 4.6
MGMY001DF03F.B mgmy001dF03f.b 115 448 26 4.6
MGMY001CD03F.B mgmy001cD03f.b 99 536 26 4.6
MGMY001CA01F.B mgmy001cA01f.b 19 459 26 4.6
MGCM002DG02F.B mgcm002dG02f.b 2 479 26 4.6
MGCM001DA11F.B mgcm001dA11f.b 1 328 26 4.6
MGAP010CG12F.B mgap010cG12f.b 113 553 26 4.6
MGAP007BH04F.B mgap007bH04f.b 26 459 26 4.6
>MGAP007BC03F.B mgap007bC03f.b 27 479
Length = 401
Score = 30.2 bits (15), Expect = 0.29
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 238 ggcgaggccggtgag 252
|||||||||||||||
Sbjct: 300 ggcgaggccggtgag 314
>MGMY006AC11F.B mgmy006aC11f.b 15 504
Length = 424
Score = 28.2 bits (14), Expect = 1.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 264 ggtcaagggctggc 277
||||||||||||||
Sbjct: 88 ggtcaagggctggc 75
>MGMY004AD10F.B mgmy004aD10f.b 34 590
Length = 514
Score = 28.2 bits (14), Expect = 1.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 156 cgctggcactgcct 169
||||||||||||||
Sbjct: 82 cgctggcactgcct 95
>MGMY003AD05F.B mgmy003aD05f.b 2 391
Length = 364
Score = 28.2 bits (14), Expect = 1.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 156 cgctggcactgcct 169
||||||||||||||
Sbjct: 82 cgctggcactgcct 95
>MGMY002AD10F.B mgmy002aD10f.b 46 382
Length = 313
Score = 28.2 bits (14), Expect = 1.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 156 cgctggcactgcct 169
||||||||||||||
Sbjct: 82 cgctggcactgcct 95
>MGCM002CC10F.B mgcm002cC10f.b 18 513
Length = 422
Score = 28.2 bits (14), Expect = 1.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 156 cgctggcactgcct 169
||||||||||||||
Sbjct: 113 cgctggcactgcct 126
>MGCM002CC03F.B mgcm002cC03f.b 21 530
Length = 437
Score = 28.2 bits (14), Expect = 1.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 156 cgctggcactgcct 169
||||||||||||||
Sbjct: 113 cgctggcactgcct 126
>MGCM002CB01F.B mgcm002cB01f.b 23 535
Length = 441
Score = 28.2 bits (14), Expect = 1.2
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 229 ggcgccgagggcgaggcc 246
||||||||||||| ||||
Sbjct: 402 ggcgccgagggcgcggcc 419
>MGCM001DF01F.B mgcm001dF01f.b 1 381
Length = 328
Score = 28.2 bits (14), Expect = 1.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 156 cgctggcactgcct 169
||||||||||||||
Sbjct: 161 cgctggcactgcct 174
>MGCM001DB06F.B mgcm001dB06f.b 20 531
Length = 442
Score = 28.2 bits (14), Expect = 1.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 108 tgaggtcatggagg 121
||||||||||||||
Sbjct: 438 tgaggtcatggagg 425
>MGMY005AB06F.B mgmy005aB06f.b 237 419
Length = 182
Score = 26.3 bits (13), Expect = 4.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 261 caaggtcaagggc 273
|||||||||||||
Sbjct: 5 caaggtcaagggc 17
>MGMY004CC02F.B mgmy004cC02f.b 42 240
Length = 198
Score = 26.3 bits (13), Expect = 4.6
Identities = 16/17 (94%)
Strand = Plus / Minus
Query: 151 ttcgccgctggcactgc 167
|||||||||||| ||||
Sbjct: 42 ttcgccgctggctctgc 26
>MGMY004AF09F.B mgmy004aF09f.b 24 586
Length = 498
Score = 26.3 bits (13), Expect = 4.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 94 aagtacaccatct 106
|||||||||||||
Sbjct: 260 aagtacaccatct 272
>MGMY002DC02F.B mgmy002dC02f.b 27 410
Length = 339
Score = 26.3 bits (13), Expect = 4.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 261 caaggtcaagggc 273
|||||||||||||
Sbjct: 162 caaggtcaagggc 174
>MGMY002DB10F.B mgmy002dB10f.b 15 426
Length = 353
Score = 26.3 bits (13), Expect = 4.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 277 ctgggcgacatca 289
|||||||||||||
Sbjct: 247 ctgggcgacatca 235
>MGMY002BA02F.B mgmy002bA02f.b 0 503
Length = 495
Score = 26.3 bits (13), Expect = 4.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 384 ggaacggcgttta 396
|||||||||||||
Sbjct: 368 ggaacggcgttta 380
>MGMY001DF03F.B mgmy001dF03f.b 115 448
Length = 333
Score = 26.3 bits (13), Expect = 4.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 230 gcgccgagggcga 242
|||||||||||||
Sbjct: 69 gcgccgagggcga 81
>MGMY001CD03F.B mgmy001cD03f.b 99 536
Length = 437
Score = 26.3 bits (13), Expect = 4.6
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 225 catgggcgccgagggcg 241
||||| |||||||||||
Sbjct: 374 catggtcgccgagggcg 390
>MGMY001CA01F.B mgmy001cA01f.b 19 459
Length = 373
Score = 26.3 bits (13), Expect = 4.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 230 gcgccgagggcga 242
|||||||||||||
Sbjct: 225 gcgccgagggcga 237
>MGCM002DG02F.B mgcm002dG02f.b 2 479
Length = 413
Score = 26.3 bits (13), Expect = 4.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 261 caaggtcaagggc 273
|||||||||||||
Sbjct: 218 caaggtcaagggc 230
>MGCM001DA11F.B mgcm001dA11f.b 1 328
Length = 275
Score = 26.3 bits (13), Expect = 4.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 229 ggcgccgagggcg 241
|||||||||||||
Sbjct: 178 ggcgccgagggcg 190
>MGAP010CG12F.B mgap010cG12f.b 113 553
Length = 440
Score = 26.3 bits (13), Expect = 4.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 324 catccccgagaag 336
|||||||||||||
Sbjct: 145 catccccgagaag 157
>MGAP007BH04F.B mgap007bH04f.b 26 459
Length = 381
Score = 26.3 bits (13), Expect = 4.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 229 ggcgccgagggcg 241
|||||||||||||
Sbjct: 160 ggcgccgagggcg 172
Database: /phillip/Ncr/MgIFAFSall
Posted date: Feb 13, 2002 12:25 PM
Number of letters in database: 785,635
Number of sequences in database: 2061
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 267
Number of Sequences: 2061
Number of extensions: 267
Number of successful extensions: 71
Number of sequences better than 10.0: 23
length of query: 499
length of database: 785,635
effective HSP length: 14
effective length of query: 485
effective length of database: 756,781
effective search space: 367038785
effective search space used: 367038785
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)