BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1610_A01_A02ZT.
seq
(609 letters)
Database: /phillip/Ncr/MgIFAFSall
2061 sequences; 785,635 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGMY001CD03F.B mgmy001cD03f.b 99 536 78 2e-15
MGCM002AD03F.B mgcm002aD03f.b 18 505 32 0.091
MGAP008CD04F.B mgap008cD04f.b 26 480 32 0.091
MGMY003DF02F.B mgmy003dF02f.b 87 663 30 0.36
MGAP007BC10F.B mgap007bC10f.b 15 472 30 0.36
MGMY004DE07F.B mgmy004dE07f.b 205 537 28 1.4
MGMY002CE01F.B mgmy002cE01f.b 143 566 28 1.4
MGMY005BH03F.B mgmy005bH03f.b 10 400 26 5.6
MGMY003DF04F.B mgmy003dF04f.b 86 465 26 5.6
MGMY002AH07F.B mgmy002aH07f.b 28 547 26 5.6
MGMY002AF03F.B mgmy002aF03f.b 31 430 26 5.6
MGCM002DA08F.B mgcm002dA08f.b 6 420 26 5.6
MGCM002CB01F.B mgcm002cB01f.b 23 535 26 5.6
MGCM001DB01F.B mgcm001dB01f.b 1 323 26 5.6
MGAP008DF07F.B mgap008dF07f.b 15 611 26 5.6
MGAP007BG04F.B mgap007bG04f.b 91 327 26 5.6
MGAP007BA02F.B mgap007bA02f.b 18 604 26 5.6
MGAP007AD09F.B mgap007aD09f.b 27 512 26 5.6
>MGMY001CD03F.B mgmy001cD03f.b 99 536
Length = 437
Score = 77.8 bits (39), Expect = 2e-15
Identities = 75/87 (86%)
Strand = Plus / Plus
Query: 322 ggcccacgcgccaacgcctttctcttcaacaccgagaccggcaagaagtacctccgcgcg 381
||||| |||||||||||||| ||||||||||||||||| |||| ||||||||| |||
Sbjct: 213 ggccctcgcgccaacgccttcctcttcaacaccgagacgggcatcaagtacctcaaggcg 272
Query: 382 ctgctcaagtaccagatcgtgcccaac 408
| ||||||||||| |||||| |||||
Sbjct: 273 atcctcaagtaccacatcgtggccaac 299
>MGCM002AD03F.B mgcm002aD03f.b 18 505
Length = 421
Score = 32.2 bits (16), Expect = 0.091
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 354 cgagaccggcaagaag 369
||||||||||||||||
Sbjct: 368 cgagaccggcaagaag 383
>MGAP008CD04F.B mgap008cD04f.b 26 480
Length = 421
Score = 32.2 bits (16), Expect = 0.091
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 349 aacaccgagaccggca 364
||||||||||||||||
Sbjct: 366 aacaccgagaccggca 381
>MGMY003DF02F.B mgmy003dF02f.b 87 663
Length = 576
Score = 30.2 bits (15), Expect = 0.36
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 527 ttggtgttgatgtgc 541
|||||||||||||||
Sbjct: 328 ttggtgttgatgtgc 314
Score = 28.2 bits (14), Expect = 1.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 523 ggcgttggtgttga 536
||||||||||||||
Sbjct: 464 ggcgttggtgttga 451
>MGAP007BC10F.B mgap007bC10f.b 15 472
Length = 396
Score = 30.2 bits (15), Expect = 0.36
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 527 ttggtgttgatgtgc 541
|||||||||||||||
Sbjct: 291 ttggtgttgatgtgc 277
>MGMY004DE07F.B mgmy004dE07f.b 205 537
Length = 332
Score = 28.2 bits (14), Expect = 1.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 339 ctttctcttcaaca 352
||||||||||||||
Sbjct: 29 ctttctcttcaaca 42
>MGMY002CE01F.B mgmy002cE01f.b 143 566
Length = 423
Score = 28.2 bits (14), Expect = 1.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 339 ctttctcttcaaca 352
||||||||||||||
Sbjct: 49 ctttctcttcaaca 62
>MGMY005BH03F.B mgmy005bH03f.b 10 400
Length = 361
Score = 26.3 bits (13), Expect = 5.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 201 cgcccaattctca 213
|||||||||||||
Sbjct: 28 cgcccaattctca 40
>MGMY003DF04F.B mgmy003dF04f.b 86 465
Length = 379
Score = 26.3 bits (13), Expect = 5.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 102 catcgccgtcaac 114
|||||||||||||
Sbjct: 112 catcgccgtcaac 124
>MGMY002AH07F.B mgmy002aH07f.b 28 547
Length = 465
Score = 26.3 bits (13), Expect = 5.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 33 tgacaagccccag 45
|||||||||||||
Sbjct: 276 tgacaagccccag 288
>MGMY002AF03F.B mgmy002aF03f.b 31 430
Length = 346
Score = 26.3 bits (13), Expect = 5.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 33 tgacaagccccag 45
|||||||||||||
Sbjct: 281 tgacaagccccag 293
>MGCM002DA08F.B mgcm002dA08f.b 6 420
Length = 362
Score = 26.3 bits (13), Expect = 5.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 104 tcgccgtcaactt 116
|||||||||||||
Sbjct: 234 tcgccgtcaactt 222
>MGCM002CB01F.B mgcm002cB01f.b 23 535
Length = 441
Score = 26.3 bits (13), Expect = 5.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 367 aagtacctccgcg 379
|||||||||||||
Sbjct: 420 aagtacctccgcg 432
>MGCM001DB01F.B mgcm001dB01f.b 1 323
Length = 283
Score = 26.3 bits (13), Expect = 5.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 385 ctcaagtaccaga 397
|||||||||||||
Sbjct: 224 ctcaagtaccaga 236
>MGAP008DF07F.B mgap008dF07f.b 15 611
Length = 529
Score = 26.3 bits (13), Expect = 5.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 418 tacagcgacgaga 430
|||||||||||||
Sbjct: 344 tacagcgacgaga 356
Score = 26.3 bits (13), Expect = 5.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 436 tacagcgacgaga 448
|||||||||||||
Sbjct: 344 tacagcgacgaga 356
>MGAP007BG04F.B mgap007bG04f.b 91 327
Length = 236
Score = 26.3 bits (13), Expect = 5.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 96 caaggtcatcgcc 108
|||||||||||||
Sbjct: 49 caaggtcatcgcc 37
>MGAP007BA02F.B mgap007bA02f.b 18 604
Length = 525
Score = 26.3 bits (13), Expect = 5.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 285 cgtctttgcccca 297
|||||||||||||
Sbjct: 404 cgtctttgcccca 392
>MGAP007AD09F.B mgap007aD09f.b 27 512
Length = 433
Score = 26.3 bits (13), Expect = 5.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 216 actgcttctcgcc 228
|||||||||||||
Sbjct: 393 actgcttctcgcc 405
Database: /phillip/Ncr/MgIFAFSall
Posted date: Feb 13, 2002 12:25 PM
Number of letters in database: 785,635
Number of sequences in database: 2061
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 331
Number of Sequences: 2061
Number of extensions: 331
Number of successful extensions: 97
Number of sequences better than 10.0: 18
length of query: 609
length of database: 785,635
effective HSP length: 14
effective length of query: 595
effective length of database: 756,781
effective search space: 450284695
effective search space used: 450284695
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)