BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1610_B01_C02ZT.
seq
(434 letters)
Database: /phillip/Ncr/MgIFAFSall
2061 sequences; 785,635 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGMY003DD06F.B mgmy003dD06f.b 119 521 28 1.00
MGMY005DA05F.B mgmy005dA05f.b 16 519 26 3.9
MGMY005CF05F.B mgmy005cF05f.b 25 501 26 3.9
MGMY003AA05F.B mgmy003aA05f.b 2 515 26 3.9
MGCM001DE06F.B mgcm001dE06f.b 14 453 26 3.9
MGAP010DA09F.B mgap010dA09f.b 30 562 26 3.9
MGAP008DG06F.B mgap008dG06f.b 125 644 26 3.9
MGAP007CH01F.B mgap007cH01f.b 113 578 26 3.9
>MGMY003DD06F.B mgmy003dD06f.b 119 521
Length = 402
Score = 28.2 bits (14), Expect = 1.00
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 221 ccttaccagcctgg 234
||||||||||||||
Sbjct: 62 ccttaccagcctgg 49
>MGMY005DA05F.B mgmy005dA05f.b 16 519
Length = 438
Score = 26.3 bits (13), Expect = 3.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 176 ttcaacgacaagc 188
|||||||||||||
Sbjct: 230 ttcaacgacaagc 242
>MGMY005CF05F.B mgmy005cF05f.b 25 501
Length = 411
Score = 26.3 bits (13), Expect = 3.9
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 78 accgcctcgaaggagtc 94
|||||||||||| ||||
Sbjct: 382 accgcctcgaagaagtc 398
>MGMY003AA05F.B mgmy003aA05f.b 2 515
Length = 475
Score = 26.3 bits (13), Expect = 3.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 310 tgagaaggagggc 322
|||||||||||||
Sbjct: 302 tgagaaggagggc 314
>MGCM001DE06F.B mgcm001dE06f.b 14 453
Length = 368
Score = 26.3 bits (13), Expect = 3.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 70 tacctcataccgc 82
|||||||||||||
Sbjct: 26 tacctcataccgc 38
>MGAP010DA09F.B mgap010dA09f.b 30 562
Length = 489
Score = 26.3 bits (13), Expect = 3.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 43 ccgtgccgtgcgc 55
|||||||||||||
Sbjct: 121 ccgtgccgtgcgc 133
>MGAP008DG06F.B mgap008dG06f.b 125 644
Length = 473
Score = 26.3 bits (13), Expect = 3.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 183 acaagctgaccat 195
|||||||||||||
Sbjct: 398 acaagctgaccat 410
>MGAP007CH01F.B mgap007cH01f.b 113 578
Length = 465
Score = 26.3 bits (13), Expect = 3.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 300 tgatgtgggatga 312
|||||||||||||
Sbjct: 23 tgatgtgggatga 11
Database: /phillip/Ncr/MgIFAFSall
Posted date: Feb 13, 2002 12:25 PM
Number of letters in database: 785,635
Number of sequences in database: 2061
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 167
Number of Sequences: 2061
Number of extensions: 167
Number of successful extensions: 43
Number of sequences better than 10.0: 8
length of query: 434
length of database: 785,635
effective HSP length: 14
effective length of query: 420
effective length of database: 756,781
effective search space: 317848020
effective search space used: 317848020
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)