BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1610_D07_G14ZT.
seq
(444 letters)
Database: /phillip/Ncr/MgIFAFSall
2061 sequences; 785,635 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGMY004CF12F.B mgmy004cF12f.b 44 651 30 0.26
MGMY003DC02F.B mgmy003dC02f.b 88 471 30 0.26
MGMY003BD10F.B mgmy003bD10f.b 12 564 30 0.26
MGMY003DG03F.B mgmy003dG03f.b 90 639 26 4.0
MGMY003BH05F.B mgmy003bH05f.b 12 627 26 4.0
MGMY002DC08F.B mgmy002dC08f.b 37 547 26 4.0
MGMY002BE06F.B mgmy002bE06f.b 192 556 26 4.0
MGMY001DA10F.B mgmy001dA10f.b 117 467 26 4.0
MGMY001AF12F.B mgmy001aF12f.b 1 574 26 4.0
MGCM002DD11F.B mgcm002dD11f.b 22 343 26 4.0
>MGMY004CF12F.B mgmy004cF12f.b 44 651
Length = 607
Score = 30.2 bits (15), Expect = 0.26
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 57 cttggagctggagtg 71
|||||||||||||||
Sbjct: 179 cttggagctggagtg 165
>MGMY003DC02F.B mgmy003dC02f.b 88 471
Length = 383
Score = 30.2 bits (15), Expect = 0.26
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 115 gaggagaaggagaca 129
|||||||||||||||
Sbjct: 137 gaggagaaggagaca 123
>MGMY003BD10F.B mgmy003bD10f.b 12 564
Length = 485
Score = 30.2 bits (15), Expect = 0.26
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 57 cttggagctggagtg 71
|||||||||||||||
Sbjct: 288 cttggagctggagtg 274
>MGMY003DG03F.B mgmy003dG03f.b 90 639
Length = 549
Score = 26.3 bits (13), Expect = 4.0
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 46 cgcgatattatct 58
|||||||||||||
Sbjct: 486 cgcgatattatct 474
>MGMY003BH05F.B mgmy003bH05f.b 12 627
Length = 548
Score = 26.3 bits (13), Expect = 4.0
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 46 cgcgatattatct 58
|||||||||||||
Sbjct: 493 cgcgatattatct 481
>MGMY002DC08F.B mgmy002dC08f.b 37 547
Length = 340
Score = 26.3 bits (13), Expect = 4.0
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 46 cgcgatattatct 58
|||||||||||||
Sbjct: 268 cgcgatattatct 256
>MGMY002BE06F.B mgmy002bE06f.b 192 556
Length = 364
Score = 26.3 bits (13), Expect = 4.0
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 263 atctggacgagaa 275
|||||||||||||
Sbjct: 308 atctggacgagaa 320
>MGMY001DA10F.B mgmy001dA10f.b 117 467
Length = 258
Score = 26.3 bits (13), Expect = 4.0
Identities = 16/17 (94%)
Strand = Plus / Minus
Query: 112 ccagaggagaaggagac 128
|||||||||||| ||||
Sbjct: 252 ccagaggagaagaagac 236
>MGMY001AF12F.B mgmy001aF12f.b 1 574
Length = 521
Score = 26.3 bits (13), Expect = 4.0
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 34 ggtgacttggtcc 46
|||||||||||||
Sbjct: 433 ggtgacttggtcc 421
>MGCM002DD11F.B mgcm002dD11f.b 22 343
Length = 250
Score = 26.3 bits (13), Expect = 4.0
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 100 gaagatgaagctc 112
|||||||||||||
Sbjct: 29 gaagatgaagctc 17
Database: /phillip/Ncr/MgIFAFSall
Posted date: Feb 13, 2002 12:25 PM
Number of letters in database: 785,635
Number of sequences in database: 2061
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 191
Number of Sequences: 2061
Number of extensions: 191
Number of successful extensions: 43
Number of sequences better than 10.0: 10
length of query: 444
length of database: 785,635
effective HSP length: 14
effective length of query: 430
effective length of database: 756,781
effective search space: 325415830
effective search space used: 325415830
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)