BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1610_E04_I08ZT.
seq
(421 letters)
Database: /phillip/Ncr/MgIFAFSall
2061 sequences; 785,635 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGMY005BH11F.B mgmy005bH11f.b 47 525 28 0.97
MGMY006DH04F.B mgmy006dH04f.b 35 626 26 3.8
MGMY005BF08F.B mgmy005bF08f.b 18 480 26 3.8
MGCM002CH06F.B mgcm002cH06f.b 23 496 26 3.8
MGCM002CG02F.B mgcm002cG02f.b 23 531 26 3.8
MGCM002CD09F.B mgcm002cD09f.b 20 532 26 3.8
MGAP010DD06F.B mgap010dD06f.b 23 547 26 3.8
MGAP010CD06F.B mgap010cD06f.b 106 515 26 3.8
MGAP010CC10F.B mgap010cC10f.b 34 587 26 3.8
MGAP007AD09F.B mgap007aD09f.b 27 512 26 3.8
>MGMY005BH11F.B mgmy005bH11f.b 47 525
Length = 444
Score = 28.2 bits (14), Expect = 0.97
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 94 catcgccgacaact 107
||||||||||||||
Sbjct: 133 catcgccgacaact 146
>MGMY006DH04F.B mgmy006dH04f.b 35 626
Length = 540
Score = 26.3 bits (13), Expect = 3.8
Identities = 19/21 (90%)
Strand = Plus / Plus
Query: 167 cttgcctccctgccatatgtc 187
||||||| | |||||||||||
Sbjct: 64 cttgcctacatgccatatgtc 84
>MGMY005BF08F.B mgmy005bF08f.b 18 480
Length = 429
Score = 26.3 bits (13), Expect = 3.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 322 tggcaatctacgg 334
|||||||||||||
Sbjct: 326 tggcaatctacgg 338
>MGCM002CH06F.B mgcm002cH06f.b 23 496
Length = 402
Score = 26.3 bits (13), Expect = 3.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 219 ccccaccgctcaa 231
|||||||||||||
Sbjct: 165 ccccaccgctcaa 177
>MGCM002CG02F.B mgcm002cG02f.b 23 531
Length = 437
Score = 26.3 bits (13), Expect = 3.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 219 ccccaccgctcaa 231
|||||||||||||
Sbjct: 197 ccccaccgctcaa 209
>MGCM002CD09F.B mgcm002cD09f.b 20 532
Length = 439
Score = 26.3 bits (13), Expect = 3.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 353 ccaagactgggtt 365
|||||||||||||
Sbjct: 387 ccaagactgggtt 399
>MGAP010DD06F.B mgap010dD06f.b 23 547
Length = 472
Score = 26.3 bits (13), Expect = 3.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 58 ttgccaccatcac 70
|||||||||||||
Sbjct: 403 ttgccaccatcac 415
>MGAP010CD06F.B mgap010cD06f.b 106 515
Length = 409
Score = 26.3 bits (13), Expect = 3.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 58 ttgccaccatcac 70
|||||||||||||
Sbjct: 376 ttgccaccatcac 388
>MGAP010CC10F.B mgap010cC10f.b 34 587
Length = 509
Score = 26.3 bits (13), Expect = 3.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 4 caacatgacagtc 16
|||||||||||||
Sbjct: 368 caacatgacagtc 380
>MGAP007AD09F.B mgap007aD09f.b 27 512
Length = 433
Score = 26.3 bits (13), Expect = 3.8
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 2 tacaacatgacagtcta 18
||||| |||||||||||
Sbjct: 17 tacaaaatgacagtcta 33
Database: /phillip/Ncr/MgIFAFSall
Posted date: Feb 13, 2002 12:25 PM
Number of letters in database: 785,635
Number of sequences in database: 2061
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 155
Number of Sequences: 2061
Number of extensions: 155
Number of successful extensions: 31
Number of sequences better than 10.0: 10
length of query: 421
length of database: 785,635
effective HSP length: 14
effective length of query: 407
effective length of database: 756,781
effective search space: 308009867
effective search space used: 308009867
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)