BLASTN 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1610_F08_K16ZT.
seq
         (312 letters)

Database: /phillip/Ncr/MgIFAFSall
           2061 sequences; 785,635 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

MGMY002AC03F.B mgmy002aC03f.b 33 536                                   26  2.8
MGCM002CD03F.B mgcm002cD03f.b 19 527                                   26  2.8
MGCM002CC08F.B mgcm002cC08f.b 20 532                                   26  2.8

>MGMY002AC03F.B mgmy002aC03f.b 33 536
          Length = 451

 Score = 26.3 bits (13), Expect = 2.8
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                        
Query: 212 tcgacaaggctga 224
           |||||||||||||
Sbjct: 236 tcgacaaggctga 248



>MGCM002CD03F.B mgcm002cD03f.b 19 527
          Length = 437

 Score = 26.3 bits (13), Expect = 2.8
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                        
Query: 261 ggactccgcgaac 273
           |||||||||||||
Sbjct: 121 ggactccgcgaac 109



>MGCM002CC08F.B mgcm002cC08f.b 20 532
          Length = 441

 Score = 26.3 bits (13), Expect = 2.8
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                        
Query: 261 ggactccgcgaac 273
           |||||||||||||
Sbjct: 121 ggactccgcgaac 109



  Database: /phillip/Ncr/MgIFAFSall
    Posted date:  Feb 13, 2002 12:25 PM
  Number of letters in database: 785,635
  Number of sequences in database:  2061
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 139
Number of Sequences: 2061
Number of extensions: 139
Number of successful extensions: 46
Number of sequences better than 10.0: 3
length of query: 312
length of database: 785,635
effective HSP length: 13
effective length of query: 299
effective length of database: 758,842
effective search space: 226893758
effective search space used: 226893758
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)