BLASTN 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1610_G04_M08ZT.
seq
         (358 letters)

Database: /phillip/Ncr/MgIFAFSall
           2061 sequences; 785,635 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

MGAP008CE05F.B mgap008cE05f.b 23 573                                   26  3.2

>MGAP008CE05F.B mgap008cE05f.b 23 573
          Length = 506

 Score = 26.3 bits (13), Expect = 3.2
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                        
Query: 136 tcaaaggcctgct 148
           |||||||||||||
Sbjct: 446 tcaaaggcctgct 434



  Database: /phillip/Ncr/MgIFAFSall
    Posted date:  Feb 13, 2002 12:25 PM
  Number of letters in database: 785,635
  Number of sequences in database:  2061
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 127
Number of Sequences: 2061
Number of extensions: 127
Number of successful extensions: 31
Number of sequences better than 10.0: 1
length of query: 358
length of database: 785,635
effective HSP length: 14
effective length of query: 344
effective length of database: 756,781
effective search space: 260332664
effective search space used: 260332664
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)