BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1610_G07_M14ZT.
seq
(269 letters)
Database: /phillip/Ncr/MgIFAFSall
2061 sequences; 785,635 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGMY006DE10F.B mgmy006dE10f.b 19 394 30 0.15
MGMY004AA06F.B mgmy004aA06f.b 24 657 30 0.15
MGAP008CH03F.B mgap008cH03f.b 31 492 30 0.15
MGMY006CC09F.B mgmy006cC09f.b 169 394 24 9.5
MGMY005CH08F.B mgmy005cH08f.b 25 468 24 9.5
MGMY005CB11F.B mgmy005cB11f.b 22 465 24 9.5
MGMY005AG02F.B mgmy005aG02f.b 21 489 24 9.5
MGMY004CA06F.B mgmy004cA06f.b 9 329 24 9.5
MGMY004AG08F.B mgmy004aG08f.b 33 551 24 9.5
MGMY004AC05F.B mgmy004aC05f.b 25 537 24 9.5
MGMY003CF06F.B mgmy003cF06f.b 42 369 24 9.5
MGMY003CE01F.B mgmy003cE01f.b 40 413 24 9.5
MGMY003AG08F.B mgmy003aG08f.b 2 445 24 9.5
MGMY002CB09F.B mgmy002cB09f.b 16 567 24 9.5
MGMY001AA08F.B mgmy001aA08f.b 30 654 24 9.5
MGCM002CE04F.B mgcm002cE04f.b 33 437 24 9.5
MGCM002CD05F.B mgcm002cD05f.b 1 449 24 9.5
MGCM001DA06F.B mgcm001dA06f.b 1 411 24 9.5
MGAP010CF04F.B mgap010cF04f.b 107 415 24 9.5
MGAP008DH12F.B mgap008dH12f.b 16 616 24 9.5
MGAP008DD11F.B mgap008dD11f.b 15 632 24 9.5
MGAP008DC04F.B mgap008dC04f.b 15 593 24 9.5
MGAP008CE03F.B mgap008cE03f.b 25 480 24 9.5
MGAP007BB11F.B mgap007bB11f.b 23 589 24 9.5
MGAP007BB06F.B mgap007bB06f.b 18 594 24 9.5
>MGMY006DE10F.B mgmy006dE10f.b 19 394
Length = 310
Score = 30.2 bits (15), Expect = 0.15
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 148 gaggttggtctcctc 162
|||||||||||||||
Sbjct: 121 gaggttggtctcctc 107
>MGMY004AA06F.B mgmy004aA06f.b 24 657
Length = 569
Score = 30.2 bits (15), Expect = 0.15
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 148 gaggttggtctcctc 162
|||||||||||||||
Sbjct: 96 gaggttggtctcctc 82
>MGAP008CH03F.B mgap008cH03f.b 31 492
Length = 427
Score = 30.2 bits (15), Expect = 0.15
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 148 gaggttggtctcctc 162
|||||||||||||||
Sbjct: 197 gaggttggtctcctc 183
>MGMY006CC09F.B mgmy006cC09f.b 169 394
Length = 225
Score = 24.3 bits (12), Expect = 9.5
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 144 gcgagaggttgg 155
||||||||||||
Sbjct: 136 gcgagaggttgg 125
>MGMY005CH08F.B mgmy005cH08f.b 25 468
Length = 379
Score = 24.3 bits (12), Expect = 9.5
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 18 ggactgggaagg 29
||||||||||||
Sbjct: 111 ggactgggaagg 100
>MGMY005CB11F.B mgmy005cB11f.b 22 465
Length = 376
Score = 24.3 bits (12), Expect = 9.5
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 157 ctcctccgagtc 168
||||||||||||
Sbjct: 332 ctcctccgagtc 321
>MGMY005AG02F.B mgmy005aG02f.b 21 489
Length = 418
Score = 24.3 bits (12), Expect = 9.5
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 232 gacttaaacgaa 243
||||||||||||
Sbjct: 56 gacttaaacgaa 45
>MGMY004CA06F.B mgmy004cA06f.b 9 329
Length = 320
Score = 24.3 bits (12), Expect = 9.5
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 148 gaggttggtctc 159
||||||||||||
Sbjct: 93 gaggttggtctc 82
>MGMY004AG08F.B mgmy004aG08f.b 33 551
Length = 462
Score = 24.3 bits (12), Expect = 9.5
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 151 gttggtctcctc 162
||||||||||||
Sbjct: 339 gttggtctcctc 328
>MGMY004AC05F.B mgmy004aC05f.b 25 537
Length = 228
Score = 24.3 bits (12), Expect = 9.5
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 232 gacttaaacgaa 243
||||||||||||
Sbjct: 177 gacttaaacgaa 188
>MGMY003CF06F.B mgmy003cF06f.b 42 369
Length = 303
Score = 24.3 bits (12), Expect = 9.5
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 2 acgaggatgagt 13
||||||||||||
Sbjct: 27 acgaggatgagt 38
>MGMY003CE01F.B mgmy003cE01f.b 40 413
Length = 351
Score = 24.3 bits (12), Expect = 9.5
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 2 acgaggatgagt 13
||||||||||||
Sbjct: 70 acgaggatgagt 59
>MGMY003AG08F.B mgmy003aG08f.b 2 445
Length = 405
Score = 24.3 bits (12), Expect = 9.5
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 151 gttggtctcctc 162
||||||||||||
Sbjct: 339 gttggtctcctc 328
>MGMY002CB09F.B mgmy002cB09f.b 16 567
Length = 488
Score = 24.3 bits (12), Expect = 9.5
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 147 agaggttggtct 158
||||||||||||
Sbjct: 247 agaggttggtct 258
>MGMY001AA08F.B mgmy001aA08f.b 30 654
Length = 572
Score = 24.3 bits (12), Expect = 9.5
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 180 gctcggggggag 191
||||||||||||
Sbjct: 456 gctcggggggag 467
>MGCM002CE04F.B mgcm002cE04f.b 33 437
Length = 342
Score = 24.3 bits (12), Expect = 9.5
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 182 tcggggggagac 193
||||||||||||
Sbjct: 303 tcggggggagac 314
>MGCM002CD05F.B mgcm002cD05f.b 1 449
Length = 383
Score = 24.3 bits (12), Expect = 9.5
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 4 gaggatgagtac 15
||||||||||||
Sbjct: 84 gaggatgagtac 95
>MGCM001DA06F.B mgcm001dA06f.b 1 411
Length = 358
Score = 24.3 bits (12), Expect = 9.5
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 4 gaggatgagtac 15
||||||||||||
Sbjct: 243 gaggatgagtac 254
>MGAP010CF04F.B mgap010cF04f.b 107 415
Length = 308
Score = 24.3 bits (12), Expect = 9.5
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 258 tttgttaaaaaa 269
||||||||||||
Sbjct: 7 tttgttaaaaaa 18
>MGAP008DH12F.B mgap008dH12f.b 16 616
Length = 532
Score = 24.3 bits (12), Expect = 9.5
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 151 gttggtctcctc 162
||||||||||||
Sbjct: 424 gttggtctcctc 413
>MGAP008DD11F.B mgap008dD11f.b 15 632
Length = 551
Score = 24.3 bits (12), Expect = 9.5
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 2 acgaggatgagt 13
||||||||||||
Sbjct: 386 acgaggatgagt 397
>MGAP008DC04F.B mgap008dC04f.b 15 593
Length = 512
Score = 24.3 bits (12), Expect = 9.5
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 157 ctcctccgagtc 168
||||||||||||
Sbjct: 414 ctcctccgagtc 403
>MGAP008CE03F.B mgap008cE03f.b 25 480
Length = 422
Score = 24.3 bits (12), Expect = 9.5
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 222 gaagttgggaga 233
||||||||||||
Sbjct: 34 gaagttgggaga 45
>MGAP007BB11F.B mgap007bB11f.b 23 589
Length = 512
Score = 24.3 bits (12), Expect = 9.5
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 2 acgaggatgagt 13
||||||||||||
Sbjct: 386 acgaggatgagt 397
>MGAP007BB06F.B mgap007bB06f.b 18 594
Length = 515
Score = 24.3 bits (12), Expect = 9.5
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 151 gttggtctcctc 162
||||||||||||
Sbjct: 453 gttggtctcctc 442
Database: /phillip/Ncr/MgIFAFSall
Posted date: Feb 13, 2002 12:25 PM
Number of letters in database: 785,635
Number of sequences in database: 2061
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 138
Number of Sequences: 2061
Number of extensions: 138
Number of successful extensions: 25
Number of sequences better than 10.0: 25
length of query: 269
length of database: 785,635
effective HSP length: 13
effective length of query: 256
effective length of database: 758,842
effective search space: 194263552
effective search space used: 194263552
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 12 (24.3 bits)