BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1610_H02_O04ZT.
seq
(333 letters)
Database: /phillip/Ncr/MgIFAFSall
2061 sequences; 785,635 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGMY003DG03F.B mgmy003dG03f.b 90 639 28 0.76
MGMY003CE02F.B mgmy003cE02f.b 39 446 28 0.76
MGMY003CC12F.B mgmy003cC12f.b 43 447 28 0.76
MGMY003BH05F.B mgmy003bH05f.b 12 627 28 0.76
MGMY002DG03F.B mgmy002dG03f.b 29 481 28 0.76
MGMY002CC07F.B mgmy002cC07f.b 4 351 28 0.76
MGMY001CC07F.B mgmy001cC07f.b 122 560 28 0.76
MGAP010CF09F.B mgap010cF09f.b 112 352 28 0.76
MGMY006BB11F.B mgmy006bB11f.b 42 387 26 3.0
MGMY003BG06F.B mgmy003bG06f.b 14 593 26 3.0
MGCM002CH01F.B mgcm002cH01f.b 30 519 26 3.0
MGCM002CF06F.B mgcm002cF06f.b 20 383 26 3.0
MGCM002CE07F.B mgcm002cE07f.b 19 511 26 3.0
MGAP007BG08F.B mgap007bG08f.b 23 594 26 3.0
>MGMY003DG03F.B mgmy003dG03f.b 90 639
Length = 549
Score = 28.2 bits (14), Expect = 0.76
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 83 agctggtgctgttg 96
||||||||||||||
Sbjct: 36 agctggtgctgttg 23
>MGMY003CE02F.B mgmy003cE02f.b 39 446
Length = 383
Score = 28.2 bits (14), Expect = 0.76
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 83 agctggtgctgttg 96
||||||||||||||
Sbjct: 43 agctggtgctgttg 30
>MGMY003CC12F.B mgmy003cC12f.b 43 447
Length = 380
Score = 28.2 bits (14), Expect = 0.76
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 152 tctcgatcctgttg 165
||||||||||||||
Sbjct: 113 tctcgatcctgttg 126
>MGMY003BH05F.B mgmy003bH05f.b 12 627
Length = 548
Score = 28.2 bits (14), Expect = 0.76
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 83 agctggtgctgttg 96
||||||||||||||
Sbjct: 43 agctggtgctgttg 30
>MGMY002DG03F.B mgmy002dG03f.b 29 481
Length = 409
Score = 28.2 bits (14), Expect = 0.76
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 83 agctggtgctgttg 96
||||||||||||||
Sbjct: 43 agctggtgctgttg 30
>MGMY002CC07F.B mgmy002cC07f.b 4 351
Length = 311
Score = 28.2 bits (14), Expect = 0.76
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 83 agctggtgctgttg 96
||||||||||||||
Sbjct: 85 agctggtgctgttg 72
>MGMY001CC07F.B mgmy001cC07f.b 122 560
Length = 438
Score = 28.2 bits (14), Expect = 0.76
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 83 agctggtgctgttg 96
||||||||||||||
Sbjct: 52 agctggtgctgttg 39
>MGAP010CF09F.B mgap010cF09f.b 112 352
Length = 240
Score = 28.2 bits (14), Expect = 0.76
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 139 atgctgcgtttgtt 152
||||||||||||||
Sbjct: 166 atgctgcgtttgtt 153
>MGMY006BB11F.B mgmy006bB11f.b 42 387
Length = 325
Score = 26.3 bits (13), Expect = 3.0
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 207 ggttggtgaagcg 219
|||||||||||||
Sbjct: 215 ggttggtgaagcg 203
>MGMY003BG06F.B mgmy003bG06f.b 14 593
Length = 514
Score = 26.3 bits (13), Expect = 3.0
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 70 aggctgctatgaa 82
|||||||||||||
Sbjct: 185 aggctgctatgaa 197
>MGCM002CH01F.B mgcm002cH01f.b 30 519
Length = 427
Score = 26.3 bits (13), Expect = 3.0
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 65 gcatgaggctgct 77
|||||||||||||
Sbjct: 356 gcatgaggctgct 344
>MGCM002CF06F.B mgcm002cF06f.b 20 383
Length = 289
Score = 26.3 bits (13), Expect = 3.0
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 125 caggcccgggtac 137
|||||||||||||
Sbjct: 281 caggcccgggtac 269
>MGCM002CE07F.B mgcm002cE07f.b 19 511
Length = 421
Score = 26.3 bits (13), Expect = 3.0
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 125 caggcccgggtac 137
|||||||||||||
Sbjct: 55 caggcccgggtac 43
>MGAP007BG08F.B mgap007bG08f.b 23 594
Length = 519
Score = 26.3 bits (13), Expect = 3.0
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 207 ggttggtgaagcg 219
|||||||||||||
Sbjct: 415 ggttggtgaagcg 403
Database: /phillip/Ncr/MgIFAFSall
Posted date: Feb 13, 2002 12:25 PM
Number of letters in database: 785,635
Number of sequences in database: 2061
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 122
Number of Sequences: 2061
Number of extensions: 122
Number of successful extensions: 40
Number of sequences better than 10.0: 14
length of query: 333
length of database: 785,635
effective HSP length: 13
effective length of query: 320
effective length of database: 758,842
effective search space: 242829440
effective search space used: 242829440
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)