BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1610_H03_O06ZT.
seq
(513 letters)
Database: /phillip/Ncr/MgIFAFSall
2061 sequences; 785,635 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGMY005DB03F.B mgmy005dB03f.b 24 571 30 0.30
MGMY001CH11F.B mgmy001cH11f.b 138 567 28 1.2
MGMY006DF03F.B mgmy006dF03f.b 15 533 26 4.7
MGMY005DE06F.B mgmy005dE06f.b 170 596 26 4.7
MGMY004DB07F.B mgmy004dB07f.b 40 481 26 4.7
MGMY002BA01F.B mgmy002bA01f.b 21 442 26 4.7
MGMY002AC05F.B mgmy002aC05f.b 30 576 26 4.7
MGMY002AA10F.B mgmy002aA10f.b 32 592 26 4.7
MGMY001DA05F.B mgmy001dA05f.b 108 485 26 4.7
MGMY001BH02F.B mgmy001bH02f.b 33 371 26 4.7
MGMY001AF11F.B mgmy001aF11f.b 159 510 26 4.7
MGCM002CC05F.B mgcm002cC05f.b 1 442 26 4.7
MGAP010CG03F.B mgap010cG03f.b 37 436 26 4.7
MGAP010CC05F.B mgap010cC05f.b 38 588 26 4.7
>MGMY005DB03F.B mgmy005dB03f.b 24 571
Length = 493
Score = 30.2 bits (15), Expect = 0.30
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 268 tgtctcttggtctga 282
|||||||||||||||
Sbjct: 134 tgtctcttggtctga 148
>MGMY001CH11F.B mgmy001cH11f.b 138 567
Length = 429
Score = 28.2 bits (14), Expect = 1.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 283 tgtagaagagattt 296
||||||||||||||
Sbjct: 403 tgtagaagagattt 390
>MGMY006DF03F.B mgmy006dF03f.b 15 533
Length = 451
Score = 26.3 bits (13), Expect = 4.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 14 tcggtcatgattt 26
|||||||||||||
Sbjct: 68 tcggtcatgattt 56
>MGMY005DE06F.B mgmy005dE06f.b 170 596
Length = 395
Score = 26.3 bits (13), Expect = 4.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 326 atgagcaagaaag 338
|||||||||||||
Sbjct: 318 atgagcaagaaag 306
>MGMY004DB07F.B mgmy004dB07f.b 40 481
Length = 417
Score = 26.3 bits (13), Expect = 4.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 326 atgagcaagaaag 338
|||||||||||||
Sbjct: 366 atgagcaagaaag 354
>MGMY002BA01F.B mgmy002bA01f.b 21 442
Length = 383
Score = 26.3 bits (13), Expect = 4.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 425 ttgatcttgttct 437
|||||||||||||
Sbjct: 168 ttgatcttgttct 156
>MGMY002AC05F.B mgmy002aC05f.b 30 576
Length = 491
Score = 26.3 bits (13), Expect = 4.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 425 ttgatcttgttct 437
|||||||||||||
Sbjct: 168 ttgatcttgttct 156
>MGMY002AA10F.B mgmy002aA10f.b 32 592
Length = 506
Score = 26.3 bits (13), Expect = 4.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 195 gagactaccagag 207
|||||||||||||
Sbjct: 111 gagactaccagag 123
>MGMY001DA05F.B mgmy001dA05f.b 108 485
Length = 377
Score = 26.3 bits (13), Expect = 4.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 401 gcccaagaccttg 413
|||||||||||||
Sbjct: 11 gcccaagaccttg 23
>MGMY001BH02F.B mgmy001bH02f.b 33 371
Length = 305
Score = 26.3 bits (13), Expect = 4.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 425 ttgatcttgttct 437
|||||||||||||
Sbjct: 168 ttgatcttgttct 156
>MGMY001AF11F.B mgmy001aF11f.b 159 510
Length = 301
Score = 26.3 bits (13), Expect = 4.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 195 gagactaccagag 207
|||||||||||||
Sbjct: 92 gagactaccagag 104
>MGCM002CC05F.B mgcm002cC05f.b 1 442
Length = 389
Score = 26.3 bits (13), Expect = 4.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 140 gcaaacaagctag 152
|||||||||||||
Sbjct: 153 gcaaacaagctag 141
>MGAP010CG03F.B mgap010cG03f.b 37 436
Length = 372
Score = 26.3 bits (13), Expect = 4.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 179 gaactcaaataca 191
|||||||||||||
Sbjct: 14 gaactcaaataca 2
>MGAP010CC05F.B mgap010cC05f.b 38 588
Length = 511
Score = 26.3 bits (13), Expect = 4.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 478 ataaactcgactt 490
|||||||||||||
Sbjct: 125 ataaactcgactt 137
Database: /phillip/Ncr/MgIFAFSall
Posted date: Feb 13, 2002 12:25 PM
Number of letters in database: 785,635
Number of sequences in database: 2061
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 193
Number of Sequences: 2061
Number of extensions: 193
Number of successful extensions: 53
Number of sequences better than 10.0: 14
length of query: 513
length of database: 785,635
effective HSP length: 14
effective length of query: 499
effective length of database: 756,781
effective search space: 377633719
effective search space used: 377633719
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)