BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1611_A03_B05ZT.
seq
(371 letters)
Database: /phillip/Ncr/MgIFAFSall
2061 sequences; 785,635 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGMY006CG10F.B mgmy006cG10f.b 170 393 28 0.85
MGMY005CG06F.B mgmy005cG06f.b 25 476 28 0.85
MGMY005CF01F.B mgmy005cF01f.b 1 396 28 0.85
MGMY004CG10F.B mgmy004cG10f.b 50 470 28 0.85
MGMY002CE06F.B mgmy002cE06f.b 19 630 28 0.85
MGCM002DG12F.B mgcm002dG12f.b 24 525 28 0.85
MGCM002DF12F.B mgcm002dF12f.b 22 510 28 0.85
MGCM002DF03F.B mgcm002dF03f.b 24 354 28 0.85
MGCM002DE06F.B mgcm002dE06f.b 23 476 28 0.85
MGCM002DC09F.B mgcm002dC09f.b 2 461 28 0.85
MGCM002DB09F.B mgcm002dB09f.b 2 439 28 0.85
MGCM002CG04F.B mgcm002cG04f.b 20 462 28 0.85
MGCM002CF02F.B mgcm002cF02f.b 17 529 28 0.85
MGCM002CB09F.B mgcm002cB09f.b 20 530 28 0.85
MGCM002AG03F.B mgcm002aG03f.b 2 533 28 0.85
MGCM002AC09F.B mgcm002aC09f.b 3 564 28 0.85
MGCM001DD08F.B mgcm001dD08f.b 1 420 28 0.85
MGCM001DC02F.B mgcm001dC02f.b 3 448 28 0.85
MGCM001DB10F.B mgcm001dB10f.b 152 605 28 0.85
MGMY003DB04F.B mgmy003dB04f.b 90 598 26 3.4
MGMY003AG04F.B mgmy003aG04f.b 1 541 26 3.4
MGMY001CF05F.B mgmy001cF05f.b 122 555 26 3.4
MGMY001BD11F.B mgmy001bD11f.b 183 570 26 3.4
MGCM002CH04F.B mgcm002cH04f.b 22 540 26 3.4
MGCM002AG10F.B mgcm002aG10f.b 3 408 26 3.4
MGAP010DD06F.B mgap010dD06f.b 23 547 26 3.4
MGAP010CG06F.B mgap010cG06f.b 33 597 26 3.4
MGAP010CD06F.B mgap010cD06f.b 106 515 26 3.4
MGAP008DH06F.B mgap008dH06f.b 16 611 26 3.4
MGAP007AF11F.B mgap007aF11f.b 26 478 26 3.4
>MGMY006CG10F.B mgmy006cG10f.b 170 393
Length = 223
Score = 28.2 bits (14), Expect = 0.85
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 40 ctcaaccatcatac 53
||||||||||||||
Sbjct: 152 ctcaaccatcatac 165
>MGMY005CG06F.B mgmy005cG06f.b 25 476
Length = 386
Score = 28.2 bits (14), Expect = 0.85
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 304 tcgtcagaggcaaa 317
||||||||||||||
Sbjct: 207 tcgtcagaggcaaa 194
>MGMY005CF01F.B mgmy005cF01f.b 1 396
Length = 395
Score = 28.2 bits (14), Expect = 0.85
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 304 tcgtcagaggcaaa 317
||||||||||||||
Sbjct: 385 tcgtcagaggcaaa 372
>MGMY004CG10F.B mgmy004cG10f.b 50 470
Length = 420
Score = 28.2 bits (14), Expect = 0.85
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 40 ctcaaccatcatac 53
||||||||||||||
Sbjct: 245 ctcaaccatcatac 258
>MGMY002CE06F.B mgmy002cE06f.b 19 630
Length = 551
Score = 28.2 bits (14), Expect = 0.85
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 304 tcgtcagaggcaaa 317
||||||||||||||
Sbjct: 444 tcgtcagaggcaaa 431
>MGCM002DG12F.B mgcm002dG12f.b 24 525
Length = 432
Score = 28.2 bits (14), Expect = 0.85
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 240 ggcctttgccaagg 253
||||||||||||||
Sbjct: 324 ggcctttgccaagg 311
>MGCM002DF12F.B mgcm002dF12f.b 22 510
Length = 417
Score = 28.2 bits (14), Expect = 0.85
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 240 ggcctttgccaagg 253
||||||||||||||
Sbjct: 323 ggcctttgccaagg 310
>MGCM002DF03F.B mgcm002dF03f.b 24 354
Length = 259
Score = 28.2 bits (14), Expect = 0.85
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 240 ggcctttgccaagg 253
||||||||||||||
Sbjct: 89 ggcctttgccaagg 76
>MGCM002DE06F.B mgcm002dE06f.b 23 476
Length = 382
Score = 28.2 bits (14), Expect = 0.85
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 240 ggcctttgccaagg 253
||||||||||||||
Sbjct: 293 ggcctttgccaagg 280
>MGCM002DC09F.B mgcm002dC09f.b 2 461
Length = 398
Score = 28.2 bits (14), Expect = 0.85
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 240 ggcctttgccaagg 253
||||||||||||||
Sbjct: 329 ggcctttgccaagg 316
>MGCM002DB09F.B mgcm002dB09f.b 2 439
Length = 381
Score = 28.2 bits (14), Expect = 0.85
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 240 ggcctttgccaagg 253
||||||||||||||
Sbjct: 267 ggcctttgccaagg 254
>MGCM002CG04F.B mgcm002cG04f.b 20 462
Length = 371
Score = 28.2 bits (14), Expect = 0.85
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 240 ggcctttgccaagg 253
||||||||||||||
Sbjct: 321 ggcctttgccaagg 308
>MGCM002CF02F.B mgcm002cF02f.b 17 529
Length = 439
Score = 28.2 bits (14), Expect = 0.85
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 240 ggcctttgccaagg 253
||||||||||||||
Sbjct: 297 ggcctttgccaagg 284
>MGCM002CB09F.B mgcm002cB09f.b 20 530
Length = 439
Score = 28.2 bits (14), Expect = 0.85
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 240 ggcctttgccaagg 253
||||||||||||||
Sbjct: 332 ggcctttgccaagg 319
>MGCM002AG03F.B mgcm002aG03f.b 2 533
Length = 475
Score = 28.2 bits (14), Expect = 0.85
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 240 ggcctttgccaagg 253
||||||||||||||
Sbjct: 350 ggcctttgccaagg 337
>MGCM002AC09F.B mgcm002aC09f.b 3 564
Length = 506
Score = 28.2 bits (14), Expect = 0.85
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 240 ggcctttgccaagg 253
||||||||||||||
Sbjct: 306 ggcctttgccaagg 293
>MGCM001DD08F.B mgcm001dD08f.b 1 420
Length = 360
Score = 28.2 bits (14), Expect = 0.85
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 240 ggcctttgccaagg 253
||||||||||||||
Sbjct: 285 ggcctttgccaagg 272
>MGCM001DC02F.B mgcm001dC02f.b 3 448
Length = 390
Score = 28.2 bits (14), Expect = 0.85
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 240 ggcctttgccaagg 253
||||||||||||||
Sbjct: 296 ggcctttgccaagg 283
>MGCM001DB10F.B mgcm001dB10f.b 152 605
Length = 416
Score = 28.2 bits (14), Expect = 0.85
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 240 ggcctttgccaagg 253
||||||||||||||
Sbjct: 327 ggcctttgccaagg 314
>MGMY003DB04F.B mgmy003dB04f.b 90 598
Length = 508
Score = 26.3 bits (13), Expect = 3.4
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 283 gtcgagttcatca 295
|||||||||||||
Sbjct: 453 gtcgagttcatca 465
>MGMY003AG04F.B mgmy003aG04f.b 1 541
Length = 501
Score = 26.3 bits (13), Expect = 3.4
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 114 tctgccagcatct 126
|||||||||||||
Sbjct: 266 tctgccagcatct 278
>MGMY001CF05F.B mgmy001cF05f.b 122 555
Length = 433
Score = 26.3 bits (13), Expect = 3.4
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 37 catctcaaccatc 49
|||||||||||||
Sbjct: 283 catctcaaccatc 295
>MGMY001BD11F.B mgmy001bD11f.b 183 570
Length = 387
Score = 26.3 bits (13), Expect = 3.4
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 37 catctcaaccatc 49
|||||||||||||
Sbjct: 333 catctcaaccatc 345
>MGCM002CH04F.B mgcm002cH04f.b 22 540
Length = 445
Score = 26.3 bits (13), Expect = 3.4
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 114 tctgccagcatct 126
|||||||||||||
Sbjct: 273 tctgccagcatct 285
>MGCM002AG10F.B mgcm002aG10f.b 3 408
Length = 362
Score = 26.3 bits (13), Expect = 3.4
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 231 agcaggcgtggcc 243
|||||||||||||
Sbjct: 49 agcaggcgtggcc 37
>MGAP010DD06F.B mgap010dD06f.b 23 547
Length = 472
Score = 26.3 bits (13), Expect = 3.4
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 177 gtcgctgccggaa 189
|||||||||||||
Sbjct: 117 gtcgctgccggaa 129
>MGAP010CG06F.B mgap010cG06f.b 33 597
Length = 527
Score = 26.3 bits (13), Expect = 3.4
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 179 cgctgccggaagc 191
|||||||||||||
Sbjct: 115 cgctgccggaagc 127
>MGAP010CD06F.B mgap010cD06f.b 106 515
Length = 409
Score = 26.3 bits (13), Expect = 3.4
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 177 gtcgctgccggaa 189
|||||||||||||
Sbjct: 90 gtcgctgccggaa 102
>MGAP008DH06F.B mgap008dH06f.b 16 611
Length = 533
Score = 26.3 bits (13), Expect = 3.4
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 283 gtcgagttcatca 295
|||||||||||||
Sbjct: 435 gtcgagttcatca 447
>MGAP007AF11F.B mgap007aF11f.b 26 478
Length = 400
Score = 26.3 bits (13), Expect = 3.4
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 347 ccatcgctcgcga 359
|||||||||||||
Sbjct: 166 ccatcgctcgcga 178
Database: /phillip/Ncr/MgIFAFSall
Posted date: Feb 13, 2002 12:25 PM
Number of letters in database: 785,635
Number of sequences in database: 2061
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 168
Number of Sequences: 2061
Number of extensions: 168
Number of successful extensions: 57
Number of sequences better than 10.0: 30
length of query: 371
length of database: 785,635
effective HSP length: 14
effective length of query: 357
effective length of database: 756,781
effective search space: 270170817
effective search space used: 270170817
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)