BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1611_A05_B09ZT.
seq
(432 letters)
Database: /phillip/Ncr/MgIFAFSall
2061 sequences; 785,635 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGMY003BD07F.B mgmy003bD07f.b 14 521 28 0.99
MGAP008DH08F.B mgap008dH08f.b 13 554 28 0.99
MGMY005CF06F.B mgmy005cF06f.b 26 454 26 3.9
MGMY005BF03F.B mgmy005bF03f.b 5 380 26 3.9
MGMY005AF01F.B mgmy005aF01f.b 27 405 26 3.9
MGMY002CF07F.B mgmy002cF07f.b 2 491 26 3.9
MGMY002AF07F.B mgmy002aF07f.b 27 436 26 3.9
MGMY001CD12F.B mgmy001cD12f.b 122 623 26 3.9
MGAP010CG10F.B mgap010cG10f.b 37 558 26 3.9
MGAP010CC02F.B mgap010cC02f.b 108 558 26 3.9
MGAP010CB04F.B mgap010cB04f.b 120 550 26 3.9
MGAP008CF07F.B mgap008cF07f.b 27 621 26 3.9
MGAP008CD05F.B mgap008cD05f.b 86 414 26 3.9
MGAP007AD04F.B mgap007aD04f.b 25 510 26 3.9
>MGMY003BD07F.B mgmy003bD07f.b 14 521
Length = 442
Score = 28.2 bits (14), Expect = 0.99
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 94 tggcggggacagcg 107
||||||||||||||
Sbjct: 370 tggcggggacagcg 357
>MGAP008DH08F.B mgap008dH08f.b 13 554
Length = 474
Score = 28.2 bits (14), Expect = 0.99
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 409 tgggccaagaacat 422
||||||||||||||
Sbjct: 10 tgggccaagaacat 23
>MGMY005CF06F.B mgmy005cF06f.b 26 454
Length = 364
Score = 26.3 bits (13), Expect = 3.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 139 ggattgaagaagt 151
|||||||||||||
Sbjct: 296 ggattgaagaagt 308
>MGMY005BF03F.B mgmy005bF03f.b 5 380
Length = 342
Score = 26.3 bits (13), Expect = 3.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 333 aaatgacaaagtc 345
|||||||||||||
Sbjct: 146 aaatgacaaagtc 134
>MGMY005AF01F.B mgmy005aF01f.b 27 405
Length = 335
Score = 26.3 bits (13), Expect = 3.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 219 tggcgtgggtgaa 231
|||||||||||||
Sbjct: 108 tggcgtgggtgaa 120
>MGMY002CF07F.B mgmy002cF07f.b 2 491
Length = 452
Score = 26.3 bits (13), Expect = 3.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 186 acgacacaaagaa 198
|||||||||||||
Sbjct: 28 acgacacaaagaa 16
>MGMY002AF07F.B mgmy002aF07f.b 27 436
Length = 363
Score = 26.3 bits (13), Expect = 3.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 186 acgacacaaagaa 198
|||||||||||||
Sbjct: 36 acgacacaaagaa 24
>MGMY001CD12F.B mgmy001cD12f.b 122 623
Length = 501
Score = 26.3 bits (13), Expect = 3.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 215 tggttggcgtggg 227
|||||||||||||
Sbjct: 378 tggttggcgtggg 366
>MGAP010CG10F.B mgap010cG10f.b 37 558
Length = 488
Score = 26.3 bits (13), Expect = 3.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 333 aaatgacaaagtc 345
|||||||||||||
Sbjct: 186 aaatgacaaagtc 174
>MGAP010CC02F.B mgap010cC02f.b 108 558
Length = 450
Score = 26.3 bits (13), Expect = 3.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 115 agctaagagaggg 127
|||||||||||||
Sbjct: 21 agctaagagaggg 9
>MGAP010CB04F.B mgap010cB04f.b 120 550
Length = 430
Score = 26.3 bits (13), Expect = 3.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 21 tgaagcggctcaa 33
|||||||||||||
Sbjct: 229 tgaagcggctcaa 217
>MGAP008CF07F.B mgap008cF07f.b 27 621
Length = 560
Score = 26.3 bits (13), Expect = 3.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 115 agctaagagaggg 127
|||||||||||||
Sbjct: 51 agctaagagaggg 39
>MGAP008CD05F.B mgap008cD05f.b 86 414
Length = 328
Score = 26.3 bits (13), Expect = 3.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 76 ggccggcgccggg 88
|||||||||||||
Sbjct: 217 ggccggcgccggg 229
>MGAP007AD04F.B mgap007aD04f.b 25 510
Length = 434
Score = 26.3 bits (13), Expect = 3.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 28 gctcaacaaaaat 40
|||||||||||||
Sbjct: 81 gctcaacaaaaat 93
Database: /phillip/Ncr/MgIFAFSall
Posted date: Feb 13, 2002 12:25 PM
Number of letters in database: 785,635
Number of sequences in database: 2061
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 158
Number of Sequences: 2061
Number of extensions: 158
Number of successful extensions: 33
Number of sequences better than 10.0: 14
length of query: 432
length of database: 785,635
effective HSP length: 14
effective length of query: 418
effective length of database: 756,781
effective search space: 316334458
effective search space used: 316334458
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)