BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1611_B04_D07ZT.
seq
(397 letters)
Database: /phillip/Ncr/MgIFAFSall
2061 sequences; 785,635 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGMY006AD09F.B mgmy006aD09f.b 28 462 32 0.058
MGMY005CG06F.B mgmy005cG06f.b 25 476 28 0.91
MGMY005CF06F.B mgmy005cF06f.b 26 454 26 3.6
MGMY001AF04F.B mgmy001aF04f.b 170 535 26 3.6
MGCM002CF08F.B mgcm002cF08f.b 22 532 26 3.6
MGAP008DF08F.B mgap008dF08f.b 13 632 26 3.6
>MGMY006AD09F.B mgmy006aD09f.b 28 462
Length = 393
Score = 32.2 bits (16), Expect = 0.058
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 137 cgccgagaaggaggtg 152
||||||||||||||||
Sbjct: 256 cgccgagaaggaggtg 241
>MGMY005CG06F.B mgmy005cG06f.b 25 476
Length = 386
Score = 28.2 bits (14), Expect = 0.91
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 137 cgccgagaaggagg 150
||||||||||||||
Sbjct: 304 cgccgagaaggagg 317
>MGMY005CF06F.B mgmy005cF06f.b 26 454
Length = 364
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 138 gccgagaaggagg 150
|||||||||||||
Sbjct: 79 gccgagaaggagg 91
>MGMY001AF04F.B mgmy001aF04f.b 170 535
Length = 327
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 79 accgagggaagcg 91
|||||||||||||
Sbjct: 162 accgagggaagcg 150
>MGCM002CF08F.B mgcm002cF08f.b 22 532
Length = 439
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 173 ccgacatgggact 185
|||||||||||||
Sbjct: 324 ccgacatgggact 336
>MGAP008DF08F.B mgap008dF08f.b 13 632
Length = 552
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 371 atatcctgggccg 383
|||||||||||||
Sbjct: 274 atatcctgggccg 286
Database: /phillip/Ncr/MgIFAFSall
Posted date: Feb 13, 2002 12:25 PM
Number of letters in database: 785,635
Number of sequences in database: 2061
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 149
Number of Sequences: 2061
Number of extensions: 149
Number of successful extensions: 43
Number of sequences better than 10.0: 6
length of query: 397
length of database: 785,635
effective HSP length: 14
effective length of query: 383
effective length of database: 756,781
effective search space: 289847123
effective search space used: 289847123
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)