BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1611_G03_N05ZT.
seq
(458 letters)
Database: /phillip/Ncr/MgIFAFSall
2061 sequences; 785,635 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGMY006AC10F.B mgmy006aC10f.b 19 322 28 1.1
MGMY004DD08F.B mgmy004dD08f.b 22 254 28 1.1
MGMY003DF04F.B mgmy003dF04f.b 86 465 28 1.1
MGCM002DH08F.B mgcm002dH08f.b 23 328 28 1.1
MGCM002CH06F.B mgcm002cH06f.b 23 496 28 1.1
MGCM002CG02F.B mgcm002cG02f.b 23 531 28 1.1
MGCM002AC06F.B mgcm002aC06f.b 3 329 28 1.1
MGAP010CH12F.B mgap010cH12f.b 117 599 28 1.1
MGMY003CD02F.B mgmy003cD02f.b 16 465 26 4.2
MGMY003CB07F.B mgmy003cB07f.b 89 407 26 4.2
MGMY003AD06F.B mgmy003aD06f.b 2 398 26 4.2
MGMY001DA02F.B mgmy001dA02f.b 26 425 26 4.2
MGAP008CF03F.B mgap008cF03f.b 26 513 26 4.2
MGAP008BC06F.B mgap008bC06f.b 24 366 26 4.2
MGAP007BE04F.B mgap007bE04f.b 23 549 26 4.2
>MGMY006AC10F.B mgmy006aC10f.b 19 322
Length = 239
Score = 28.2 bits (14), Expect = 1.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 189 acgccatcgtcaac 202
||||||||||||||
Sbjct: 212 acgccatcgtcaac 199
>MGMY004DD08F.B mgmy004dD08f.b 22 254
Length = 190
Score = 28.2 bits (14), Expect = 1.1
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 115 tgcctactctcctgatga 132
||||| ||||||||||||
Sbjct: 32 tgcctgctctcctgatga 49
>MGMY003DF04F.B mgmy003dF04f.b 86 465
Length = 379
Score = 28.2 bits (14), Expect = 1.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 269 gacctggtcaagga 282
||||||||||||||
Sbjct: 212 gacctggtcaagga 225
>MGCM002DH08F.B mgcm002dH08f.b 23 328
Length = 211
Score = 28.2 bits (14), Expect = 1.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 189 acgccatcgtcaac 202
||||||||||||||
Sbjct: 36 acgccatcgtcaac 23
>MGCM002CH06F.B mgcm002cH06f.b 23 496
Length = 402
Score = 28.2 bits (14), Expect = 1.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 294 tcggccccatcgac 307
||||||||||||||
Sbjct: 222 tcggccccatcgac 235
>MGCM002CG02F.B mgcm002cG02f.b 23 531
Length = 437
Score = 28.2 bits (14), Expect = 1.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 294 tcggccccatcgac 307
||||||||||||||
Sbjct: 254 tcggccccatcgac 267
>MGCM002AC06F.B mgcm002aC06f.b 3 329
Length = 271
Score = 28.2 bits (14), Expect = 1.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 275 gtcaaggagtctgg 288
||||||||||||||
Sbjct: 213 gtcaaggagtctgg 226
>MGAP010CH12F.B mgap010cH12f.b 117 599
Length = 482
Score = 28.2 bits (14), Expect = 1.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 223 cggcggcagcggtg 236
||||||||||||||
Sbjct: 227 cggcggcagcggtg 240
>MGMY003CD02F.B mgmy003cD02f.b 16 465
Length = 449
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 315 atgctgtcatcac 327
|||||||||||||
Sbjct: 211 atgctgtcatcac 223
>MGMY003CB07F.B mgmy003cB07f.b 89 407
Length = 318
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 136 catcaacagacgc 148
|||||||||||||
Sbjct: 196 catcaacagacgc 184
>MGMY003AD06F.B mgmy003aD06f.b 2 398
Length = 371
Score = 26.3 bits (13), Expect = 4.2
Identities = 16/17 (94%)
Strand = Plus / Minus
Query: 234 gtgtcgacggcgccatt 250
|||| ||||||||||||
Sbjct: 169 gtgttgacggcgccatt 153
>MGMY001DA02F.B mgmy001dA02f.b 26 425
Length = 341
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 185 atcgacgccatcg 197
|||||||||||||
Sbjct: 88 atcgacgccatcg 100
>MGAP008CF03F.B mgap008cF03f.b 26 513
Length = 454
Score = 26.3 bits (13), Expect = 4.2
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 217 cctccgcggcggcagcg 233
||||| |||||||||||
Sbjct: 208 cctccacggcggcagcg 224
>MGAP008BC06F.B mgap008bC06f.b 24 366
Length = 299
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 190 cgccatcgtcaac 202
|||||||||||||
Sbjct: 240 cgccatcgtcaac 252
>MGAP007BE04F.B mgap007bE04f.b 23 549
Length = 477
Score = 26.3 bits (13), Expect = 4.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 62 ctctaccgagatc 74
|||||||||||||
Sbjct: 195 ctctaccgagatc 207
Database: /phillip/Ncr/MgIFAFSall
Posted date: Feb 13, 2002 12:25 PM
Number of letters in database: 785,635
Number of sequences in database: 2061
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 227
Number of Sequences: 2061
Number of extensions: 227
Number of successful extensions: 62
Number of sequences better than 10.0: 15
length of query: 458
length of database: 785,635
effective HSP length: 14
effective length of query: 444
effective length of database: 756,781
effective search space: 336010764
effective search space used: 336010764
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)