BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1611_H11_P21ZT.
seq
(499 letters)
Database: /phillip/Ncr/MgIFAFSall
2061 sequences; 785,635 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGAP010DG07F.B mgap010dG07f.b 31 529 30 0.29
MGMY003BE06F.B mgmy003bE06f.b 11 480 28 1.2
MGAP007CB02F.B mgap007cB02f.b 15 472 28 1.2
MGAP007AC03F.B mgap007aC03f.b 19 532 28 1.2
MGMY006AG12F.B mgmy006aG12f.b 20 511 26 4.6
MGMY006AG09F.B mgmy006aG09f.b 31 528 26 4.6
MGMY005CE11F.B mgmy005cE11f.b 1 293 26 4.6
MGMY003DF02F.B mgmy003dF02f.b 87 663 26 4.6
MGMY003AB09F.B mgmy003aB09f.b 2 441 26 4.6
MGCM002DH01F.B mgcm002dH01f.b 21 535 26 4.6
MGCM001DG10F.B mgcm001dG10f.b 21 465 26 4.6
MGAP007BD05F.B mgap007bD05f.b 22 589 26 4.6
MGAP007AA09F.B mgap007aA09f.b 27 594 26 4.6
>MGAP010DG07F.B mgap010dG07f.b 31 529
Length = 455
Score = 30.2 bits (15), Expect = 0.29
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 83 cggcgaagaagatgc 97
|||||||||||||||
Sbjct: 183 cggcgaagaagatgc 169
>MGMY003BE06F.B mgmy003bE06f.b 11 480
Length = 401
Score = 28.2 bits (14), Expect = 1.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 407 cctttgtttggatt 420
||||||||||||||
Sbjct: 369 cctttgtttggatt 382
>MGAP007CB02F.B mgap007cB02f.b 15 472
Length = 389
Score = 28.2 bits (14), Expect = 1.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 410 ttgtttggattcac 423
||||||||||||||
Sbjct: 89 ttgtttggattcac 76
>MGAP007AC03F.B mgap007aC03f.b 19 532
Length = 452
Score = 28.2 bits (14), Expect = 1.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 410 ttgtttggattcac 423
||||||||||||||
Sbjct: 96 ttgtttggattcac 83
>MGMY006AG12F.B mgmy006aG12f.b 20 511
Length = 413
Score = 26.3 bits (13), Expect = 4.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 8 agcgtcaacggcg 20
|||||||||||||
Sbjct: 87 agcgtcaacggcg 99
>MGMY006AG09F.B mgmy006aG09f.b 31 528
Length = 461
Score = 26.3 bits (13), Expect = 4.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 8 agcgtcaacggcg 20
|||||||||||||
Sbjct: 279 agcgtcaacggcg 291
>MGMY005CE11F.B mgmy005cE11f.b 1 293
Length = 292
Score = 26.3 bits (13), Expect = 4.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 305 ccaagtcccaatc 317
|||||||||||||
Sbjct: 215 ccaagtcccaatc 203
>MGMY003DF02F.B mgmy003dF02f.b 87 663
Length = 576
Score = 26.3 bits (13), Expect = 4.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 29 ggcgttggtgttg 41
|||||||||||||
Sbjct: 464 ggcgttggtgttg 452
>MGMY003AB09F.B mgmy003aB09f.b 2 441
Length = 400
Score = 26.3 bits (13), Expect = 4.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 72 gatgttcttgacg 84
|||||||||||||
Sbjct: 339 gatgttcttgacg 327
>MGCM002DH01F.B mgcm002dH01f.b 21 535
Length = 443
Score = 26.3 bits (13), Expect = 4.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 70 tggatgttcttga 82
|||||||||||||
Sbjct: 20 tggatgttcttga 32
>MGCM001DG10F.B mgcm001dG10f.b 21 465
Length = 377
Score = 26.3 bits (13), Expect = 4.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 138 tgtgctgaaggag 150
|||||||||||||
Sbjct: 130 tgtgctgaaggag 142
>MGAP007BD05F.B mgap007bD05f.b 22 589
Length = 515
Score = 26.3 bits (13), Expect = 4.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 85 gcgaagaagatgc 97
|||||||||||||
Sbjct: 357 gcgaagaagatgc 345
>MGAP007AA09F.B mgap007aA09f.b 27 594
Length = 516
Score = 26.3 bits (13), Expect = 4.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 107 agttgatcgattc 119
|||||||||||||
Sbjct: 110 agttgatcgattc 98
Database: /phillip/Ncr/MgIFAFSall
Posted date: Feb 13, 2002 12:25 PM
Number of letters in database: 785,635
Number of sequences in database: 2061
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 197
Number of Sequences: 2061
Number of extensions: 197
Number of successful extensions: 66
Number of sequences better than 10.0: 13
length of query: 499
length of database: 785,635
effective HSP length: 14
effective length of query: 485
effective length of database: 756,781
effective search space: 367038785
effective search space used: 367038785
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)