BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1612_B03_D06ZT.
seq
(577 letters)
Database: /phillip/Ncr/MgIFAFSall
2061 sequences; 785,635 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGMY006DF02F.B mgmy006dF02f.b 19 640 26 5.3
MGMY006CG10F.B mgmy006cG10f.b 170 393 26 5.3
MGMY005BD07F.B mgmy005bD07f.b 20 518 26 5.3
MGMY005BD05F.B mgmy005bD05f.b 35 295 26 5.3
MGMY003DD10F.B mgmy003dD10f.b 10 283 26 5.3
MGMY002AD02F.B mgmy002aD02f.b 185 492 26 5.3
MGMY001AB06F.B mgmy001aB06f.b 2 550 26 5.3
MGAP010CG01F.B mgap010cG01f.b 110 615 26 5.3
MGAP008CD03F.B mgap008cD03f.b 50 542 26 5.3
MGAP007BA03F.B mgap007bA03f.b 25 478 26 5.3
>MGMY006DF02F.B mgmy006dF02f.b 19 640
Length = 556
Score = 26.3 bits (13), Expect = 5.3
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 34 gagatggctgtgg 46
|||||||||||||
Sbjct: 437 gagatggctgtgg 425
>MGMY006CG10F.B mgmy006cG10f.b 170 393
Length = 223
Score = 26.3 bits (13), Expect = 5.3
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 141 gcgtcgtgttatc 153
|||||||||||||
Sbjct: 14 gcgtcgtgttatc 2
>MGMY005BD07F.B mgmy005bD07f.b 20 518
Length = 466
Score = 26.3 bits (13), Expect = 5.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 167 cggccgagaacct 179
|||||||||||||
Sbjct: 316 cggccgagaacct 328
>MGMY005BD05F.B mgmy005bD05f.b 35 295
Length = 227
Score = 26.3 bits (13), Expect = 5.3
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 165 tacggccgagaac 177
|||||||||||||
Sbjct: 105 tacggccgagaac 93
>MGMY003DD10F.B mgmy003dD10f.b 10 283
Length = 273
Score = 26.3 bits (13), Expect = 5.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 425 tgggcaagtatac 437
|||||||||||||
Sbjct: 232 tgggcaagtatac 244
>MGMY002AD02F.B mgmy002aD02f.b 185 492
Length = 307
Score = 26.3 bits (13), Expect = 5.3
Identities = 16/17 (94%)
Strand = Plus / Minus
Query: 350 gttgaactcccagtcct 366
|||||||||||| ||||
Sbjct: 107 gttgaactcccactcct 91
>MGMY001AB06F.B mgmy001aB06f.b 2 550
Length = 512
Score = 26.3 bits (13), Expect = 5.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 248 gctgaagtatgga 260
|||||||||||||
Sbjct: 476 gctgaagtatgga 488
>MGAP010CG01F.B mgap010cG01f.b 110 615
Length = 505
Score = 26.3 bits (13), Expect = 5.3
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 213 tttggctgccact 225
|||||||||||||
Sbjct: 179 tttggctgccact 167
>MGAP008CD03F.B mgap008cD03f.b 50 542
Length = 492
Score = 26.3 bits (13), Expect = 5.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 387 gccaagatgattg 399
|||||||||||||
Sbjct: 13 gccaagatgattg 25
>MGAP007BA03F.B mgap007bA03f.b 25 478
Length = 401
Score = 26.3 bits (13), Expect = 5.3
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 320 attgtcgtgctag 332
|||||||||||||
Sbjct: 233 attgtcgtgctag 221
Database: /phillip/Ncr/MgIFAFSall
Posted date: Feb 13, 2002 12:25 PM
Number of letters in database: 785,635
Number of sequences in database: 2061
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 211
Number of Sequences: 2061
Number of extensions: 211
Number of successful extensions: 57
Number of sequences better than 10.0: 10
length of query: 577
length of database: 785,635
effective HSP length: 14
effective length of query: 563
effective length of database: 756,781
effective search space: 426067703
effective search space used: 426067703
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)