BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1612_B04_D08ZT.
seq
(394 letters)
Database: /phillip/Ncr/MgIFAFSall
2061 sequences; 785,635 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGAP007CD12F.B mgap007cD12f.b 19 666 32 0.058
MGMY004DH01F.B mgmy004dH01f.b 27 457 28 0.90
MGMY006AC10F.B mgmy006aC10f.b 19 322 26 3.6
MGMY002DD02F.B mgmy002dD02f.b 20 484 26 3.6
MGMY002BF06F.B mgmy002bF06f.b 133 519 26 3.6
MGMY002AC05F.B mgmy002aC05f.b 30 576 26 3.6
MGMY001DC01F.B mgmy001dC01f.b 22 397 26 3.6
>MGAP007CD12F.B mgap007cD12f.b 19 666
Length = 572
Score = 32.2 bits (16), Expect = 0.058
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 256 agcattgatttgatgg 271
||||||||||||||||
Sbjct: 32 agcattgatttgatgg 47
>MGMY004DH01F.B mgmy004dH01f.b 27 457
Length = 410
Score = 28.2 bits (14), Expect = 0.90
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 73 atatcaagtcgcct 86
||||||||||||||
Sbjct: 122 atatcaagtcgcct 135
>MGMY006AC10F.B mgmy006aC10f.b 19 322
Length = 239
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 99 tatgagttgttct 111
|||||||||||||
Sbjct: 30 tatgagttgttct 18
>MGMY002DD02F.B mgmy002dD02f.b 20 484
Length = 375
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 248 gcatggtgagcat 260
|||||||||||||
Sbjct: 245 gcatggtgagcat 257
>MGMY002BF06F.B mgmy002bF06f.b 133 519
Length = 386
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 159 gctggaatgacac 171
|||||||||||||
Sbjct: 263 gctggaatgacac 251
>MGMY002AC05F.B mgmy002aC05f.b 30 576
Length = 491
Score = 26.3 bits (13), Expect = 3.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 85 ctatggacttggt 97
|||||||||||||
Sbjct: 390 ctatggacttggt 402
>MGMY001DC01F.B mgmy001dC01f.b 22 397
Length = 308
Score = 26.3 bits (13), Expect = 3.6
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 63 gttgcgctggatatcaa 79
||||| |||||||||||
Sbjct: 76 gttgccctggatatcaa 92
Database: /phillip/Ncr/MgIFAFSall
Posted date: Feb 13, 2002 12:25 PM
Number of letters in database: 785,635
Number of sequences in database: 2061
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 131
Number of Sequences: 2061
Number of extensions: 131
Number of successful extensions: 26
Number of sequences better than 10.0: 7
length of query: 394
length of database: 785,635
effective HSP length: 14
effective length of query: 380
effective length of database: 756,781
effective search space: 287576780
effective search space used: 287576780
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)