BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1612_B08_D16ZT.
seq
(477 letters)
Database: /phillip/Ncr/MgIFAFSall
2061 sequences; 785,635 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGAP007BA12F.B mgap007bA12f.b 17 551 28 1.1
MGMY005DG10F.B mgmy005dG10f.b 10 505 26 4.3
MGMY005CA12F.B mgmy005cA12f.b 22 540 26 4.3
MGMY004DD01F.B mgmy004dD01f.b 39 491 26 4.3
MGMY004AG11F.B mgmy004aG11f.b 22 540 26 4.3
MGMY002DG08F.B mgmy002dG08f.b 24 419 26 4.3
MGMY002CD10F.B mgmy002cD10f.b 28 563 26 4.3
MGMY002BA06F.B mgmy002bA06f.b 22 550 26 4.3
MGMY001BE06F.B mgmy001bE06f.b 191 559 26 4.3
MGMY001BA12F.B mgmy001bA12f.b 23 446 26 4.3
MGCM002AH10F.B mgcm002aH10f.b 2 339 26 4.3
MGCM002AE08F.B mgcm002aE08f.b 1 474 26 4.3
MGCM002AA04F.B mgcm002aA04f.b 17 603 26 4.3
MGCM001DH01F.B mgcm001dH01f.b 30 451 26 4.3
MGAP010DF09F.B mgap010dF09f.b 144 553 26 4.3
>MGAP007BA12F.B mgap007bA12f.b 17 551
Length = 448
Score = 28.2 bits (14), Expect = 1.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 448 tggtatcataaaat 461
||||||||||||||
Sbjct: 83 tggtatcataaaat 96
>MGMY005DG10F.B mgmy005dG10f.b 10 505
Length = 451
Score = 26.3 bits (13), Expect = 4.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 100 acggaacggatat 112
|||||||||||||
Sbjct: 436 acggaacggatat 448
>MGMY005CA12F.B mgmy005cA12f.b 22 540
Length = 465
Score = 26.3 bits (13), Expect = 4.3
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 439 aaccgaggctggt 451
|||||||||||||
Sbjct: 168 aaccgaggctggt 156
>MGMY004DD01F.B mgmy004dD01f.b 39 491
Length = 440
Score = 26.3 bits (13), Expect = 4.3
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 127 cgcgacttggaaa 139
|||||||||||||
Sbjct: 386 cgcgacttggaaa 374
>MGMY004AG11F.B mgmy004aG11f.b 22 540
Length = 453
Score = 26.3 bits (13), Expect = 4.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 100 acggaacggatat 112
|||||||||||||
Sbjct: 345 acggaacggatat 357
>MGMY002DG08F.B mgmy002dG08f.b 24 419
Length = 348
Score = 26.3 bits (13), Expect = 4.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 72 aacctcgacttgc 84
|||||||||||||
Sbjct: 247 aacctcgacttgc 259
>MGMY002CD10F.B mgmy002cD10f.b 28 563
Length = 483
Score = 26.3 bits (13), Expect = 4.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 100 acggaacggatat 112
|||||||||||||
Sbjct: 162 acggaacggatat 174
>MGMY002BA06F.B mgmy002bA06f.b 22 550
Length = 464
Score = 26.3 bits (13), Expect = 4.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 442 cgaggctggtatc 454
|||||||||||||
Sbjct: 9 cgaggctggtatc 21
>MGMY001BE06F.B mgmy001bE06f.b 191 559
Length = 368
Score = 26.3 bits (13), Expect = 4.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 442 cgaggctggtatc 454
|||||||||||||
Sbjct: 94 cgaggctggtatc 106
>MGMY001BA12F.B mgmy001bA12f.b 23 446
Length = 377
Score = 26.3 bits (13), Expect = 4.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 100 acggaacggatat 112
|||||||||||||
Sbjct: 142 acggaacggatat 154
>MGCM002AH10F.B mgcm002aH10f.b 2 339
Length = 337
Score = 26.3 bits (13), Expect = 4.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 442 cgaggctggtatc 454
|||||||||||||
Sbjct: 260 cgaggctggtatc 272
>MGCM002AE08F.B mgcm002aE08f.b 1 474
Length = 414
Score = 26.3 bits (13), Expect = 4.3
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 322 ttggtaattgttt 334
|||||||||||||
Sbjct: 108 ttggtaattgttt 96
>MGCM002AA04F.B mgcm002aA04f.b 17 603
Length = 520
Score = 26.3 bits (13), Expect = 4.3
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 322 ttggtaattgttt 334
|||||||||||||
Sbjct: 112 ttggtaattgttt 100
>MGCM001DH01F.B mgcm001dH01f.b 30 451
Length = 373
Score = 26.3 bits (13), Expect = 4.3
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 433 cttcaaaaccgaggctg 449
|||||||||||| ||||
Sbjct: 38 cttcaaaaccgatgctg 54
>MGAP010DF09F.B mgap010dF09f.b 144 553
Length = 409
Score = 26.3 bits (13), Expect = 4.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 273 gacagggcttttc 285
|||||||||||||
Sbjct: 257 gacagggcttttc 269
Database: /phillip/Ncr/MgIFAFSall
Posted date: Feb 13, 2002 12:25 PM
Number of letters in database: 785,635
Number of sequences in database: 2061
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 221
Number of Sequences: 2061
Number of extensions: 221
Number of successful extensions: 42
Number of sequences better than 10.0: 16
length of query: 477
length of database: 785,635
effective HSP length: 14
effective length of query: 463
effective length of database: 756,781
effective search space: 350389603
effective search space used: 350389603
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)