BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1612_C11_F22ZT.
seq
(210 letters)
Database: /phillip/Ncr/MgIFAFSall
2061 sequences; 785,635 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGMY003DD12F.B mgmy003dD12f.b 85 618 28 0.47
MGCM002AE04F.B mgcm002aE04f.b 19 544 28 0.47
MGMY005CC04F.B mgmy005cC04f.b 160 463 26 1.9
MGMY004DG03F.B mgmy004dG03f.b 44 416 26 1.9
MGMY003CG01F.B mgmy003cG01f.b 39 394 26 1.9
MGMY003BA12F.B mgmy003bA12f.b 13 515 26 1.9
MGMY001BG07F.B mgmy001bG07f.b 30 566 26 1.9
MGCM002CD09F.B mgcm002cD09f.b 20 532 26 1.9
MGCM001DD10F.B mgcm001dD10f.b 21 517 26 1.9
MGAP007CE11F.B mgap007cE11f.b 32 681 26 1.9
MGMY006DG01F.B mgmy006dG01f.b 31 487 24 7.3
MGMY006CE08F.B mgmy006cE08f.b 191 427 24 7.3
MGMY002CF01F.B mgmy002cF01f.b 27 613 24 7.3
MGMY001CE02F.B mgmy001cE02f.b 116 545 24 7.3
MGCM002DC08F.B mgcm002dC08f.b 0 420 24 7.3
MGAP010DH03F.B mgap010dH03f.b 142 653 24 7.3
MGAP008DB04F.B mgap008dB04f.b 17 615 24 7.3
MGAP007CG06F.B mgap007cG06f.b 125 509 24 7.3
MGAP007BG04F.B mgap007bG04f.b 91 327 24 7.3
MGAP007AD09F.B mgap007aD09f.b 27 512 24 7.3
>MGMY003DD12F.B mgmy003dD12f.b 85 618
Length = 533
Score = 28.2 bits (14), Expect = 0.47
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 125 aacccagtctgtat 138
||||||||||||||
Sbjct: 316 aacccagtctgtat 303
>MGCM002AE04F.B mgcm002aE04f.b 19 544
Length = 459
Score = 28.2 bits (14), Expect = 0.47
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 139 tctttgagatccggtttt 156
||||||||||| ||||||
Sbjct: 56 tctttgagatctggtttt 39
>MGMY005CC04F.B mgmy005cC04f.b 160 463
Length = 251
Score = 26.3 bits (13), Expect = 1.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 50 tcgctcacatcaa 62
|||||||||||||
Sbjct: 10 tcgctcacatcaa 22
>MGMY004DG03F.B mgmy004dG03f.b 44 416
Length = 352
Score = 26.3 bits (13), Expect = 1.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 164 ccacagcatcaat 176
|||||||||||||
Sbjct: 11 ccacagcatcaat 23
>MGMY003CG01F.B mgmy003cG01f.b 39 394
Length = 332
Score = 26.3 bits (13), Expect = 1.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 71 cgactggcccaag 83
|||||||||||||
Sbjct: 269 cgactggcccaag 281
>MGMY003BA12F.B mgmy003bA12f.b 13 515
Length = 436
Score = 26.3 bits (13), Expect = 1.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 167 cagcatcaatggc 179
|||||||||||||
Sbjct: 371 cagcatcaatggc 359
>MGMY001BG07F.B mgmy001bG07f.b 30 566
Length = 505
Score = 26.3 bits (13), Expect = 1.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 167 cagcatcaatggc 179
|||||||||||||
Sbjct: 346 cagcatcaatggc 334
>MGCM002CD09F.B mgcm002cD09f.b 20 532
Length = 439
Score = 26.3 bits (13), Expect = 1.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 122 ccaaacccagtct 134
|||||||||||||
Sbjct: 402 ccaaacccagtct 390
>MGCM001DD10F.B mgcm001dD10f.b 21 517
Length = 430
Score = 26.3 bits (13), Expect = 1.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 135 gtattctttgaga 147
|||||||||||||
Sbjct: 225 gtattctttgaga 213
>MGAP007CE11F.B mgap007cE11f.b 32 681
Length = 596
Score = 26.3 bits (13), Expect = 1.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 86 gcacgtttaatac 98
|||||||||||||
Sbjct: 199 gcacgtttaatac 211
>MGMY006DG01F.B mgmy006dG01f.b 31 487
Length = 405
Score = 24.3 bits (12), Expect = 7.3
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 129 cagtctgtattc 140
||||||||||||
Sbjct: 91 cagtctgtattc 80
>MGMY006CE08F.B mgmy006cE08f.b 191 427
Length = 236
Score = 24.3 bits (12), Expect = 7.3
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 99 gggaaattctag 110
||||||||||||
Sbjct: 86 gggaaattctag 97
>MGMY002CF01F.B mgmy002cF01f.b 27 613
Length = 534
Score = 24.3 bits (12), Expect = 7.3
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 42 gtagccaatcgc 53
||||||||||||
Sbjct: 68 gtagccaatcgc 57
>MGMY001CE02F.B mgmy001cE02f.b 116 545
Length = 332
Score = 24.3 bits (12), Expect = 7.3
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 199 gaataccatggt 210
||||||||||||
Sbjct: 182 gaataccatggt 171
>MGCM002DC08F.B mgcm002dC08f.b 0 420
Length = 376
Score = 24.3 bits (12), Expect = 7.3
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 75 tggcccaagttg 86
||||||||||||
Sbjct: 216 tggcccaagttg 205
>MGAP010DH03F.B mgap010dH03f.b 142 653
Length = 511
Score = 24.3 bits (12), Expect = 7.3
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 50 tcgctcacatca 61
||||||||||||
Sbjct: 324 tcgctcacatca 313
>MGAP008DB04F.B mgap008dB04f.b 17 615
Length = 532
Score = 24.3 bits (12), Expect = 7.3
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 103 aattctagactg 114
||||||||||||
Sbjct: 464 aattctagactg 475
>MGAP007CG06F.B mgap007cG06f.b 125 509
Length = 384
Score = 24.3 bits (12), Expect = 7.3
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 110 gactgtcagcac 121
||||||||||||
Sbjct: 7 gactgtcagcac 18
>MGAP007BG04F.B mgap007bG04f.b 91 327
Length = 236
Score = 24.3 bits (12), Expect = 7.3
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 77 gcccaagttgca 88
||||||||||||
Sbjct: 76 gcccaagttgca 65
>MGAP007AD09F.B mgap007aD09f.b 27 512
Length = 433
Score = 24.3 bits (12), Expect = 7.3
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 106 tctagactgtca 117
||||||||||||
Sbjct: 35 tctagactgtca 24
Database: /phillip/Ncr/MgIFAFSall
Posted date: Feb 13, 2002 12:25 PM
Number of letters in database: 785,635
Number of sequences in database: 2061
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 64
Number of Sequences: 2061
Number of extensions: 64
Number of successful extensions: 21
Number of sequences better than 10.0: 21
length of query: 210
length of database: 785,635
effective HSP length: 13
effective length of query: 197
effective length of database: 758,842
effective search space: 149491874
effective search space used: 149491874
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 12 (24.3 bits)