BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1612_D10_H20ZT.
seq
(355 letters)
Database: /phillip/Ncr/MgIFAFSall
2061 sequences; 785,635 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGMY006DD01F.B mgmy006dD01f.b 174 459 28 0.81
MGMY002DD05F.B mgmy002dD05f.b 28 435 28 0.81
MGMY002BG06F.B mgmy002bG06f.b 24 583 28 0.81
MGMY003DE10F.B mgmy003dE10f.b 86 484 26 3.2
MGMY001DA05F.B mgmy001dA05f.b 108 485 26 3.2
MGAP010CH08F.B mgap010cH08f.b 103 545 26 3.2
MGAP008DB01F.B mgap008dB01f.b 0 614 26 3.2
MGAP008BA12F.B mgap008bA12f.b 25 389 26 3.2
>MGMY006DD01F.B mgmy006dD01f.b 174 459
Length = 230
Score = 28.2 bits (14), Expect = 0.81
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 70 attgccaaggtaaa 83
||||||||||||||
Sbjct: 182 attgccaaggtaaa 195
>MGMY002DD05F.B mgmy002dD05f.b 28 435
Length = 364
Score = 28.2 bits (14), Expect = 0.81
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 88 agaagagacatacaagat 105
|||| |||||||||||||
Sbjct: 338 agaaaagacatacaagat 321
>MGMY002BG06F.B mgmy002bG06f.b 24 583
Length = 446
Score = 28.2 bits (14), Expect = 0.81
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 88 agaagagacatacaagat 105
|||| |||||||||||||
Sbjct: 377 agaaaagacatacaagat 360
>MGMY003DE10F.B mgmy003dE10f.b 86 484
Length = 389
Score = 26.3 bits (13), Expect = 3.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 202 cgtcaacaccaag 214
|||||||||||||
Sbjct: 174 cgtcaacaccaag 186
>MGMY001DA05F.B mgmy001dA05f.b 108 485
Length = 377
Score = 26.3 bits (13), Expect = 3.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 194 aacagcatcgtca 206
|||||||||||||
Sbjct: 327 aacagcatcgtca 339
>MGAP010CH08F.B mgap010cH08f.b 103 545
Length = 442
Score = 26.3 bits (13), Expect = 3.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 195 acagcatcgtcaa 207
|||||||||||||
Sbjct: 40 acagcatcgtcaa 28
>MGAP008DB01F.B mgap008dB01f.b 0 614
Length = 561
Score = 26.3 bits (13), Expect = 3.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 197 agcatcgtcaaca 209
|||||||||||||
Sbjct: 188 agcatcgtcaaca 200
>MGAP008BA12F.B mgap008bA12f.b 25 389
Length = 321
Score = 26.3 bits (13), Expect = 3.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 237 tggaccgtggcga 249
|||||||||||||
Sbjct: 191 tggaccgtggcga 203
Database: /phillip/Ncr/MgIFAFSall
Posted date: Feb 13, 2002 12:25 PM
Number of letters in database: 785,635
Number of sequences in database: 2061
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 159
Number of Sequences: 2061
Number of extensions: 159
Number of successful extensions: 38
Number of sequences better than 10.0: 8
length of query: 355
length of database: 785,635
effective HSP length: 14
effective length of query: 341
effective length of database: 756,781
effective search space: 258062321
effective search space used: 258062321
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)