BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1612_F04_L08ZT.
seq
(203 letters)
Database: /phillip/Ncr/MgIFAFSall
2061 sequences; 785,635 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGMY006DH11F.B mgmy006dH11f.b 22 478 24 7.1
MGMY006AB10F.B mgmy006aB10f.b 2 481 24 7.1
MGMY006AB03F.B mgmy006aB03f.b 31 499 24 7.1
MGMY005CH08F.B mgmy005cH08f.b 25 468 24 7.1
MGMY005AE08F.B mgmy005aE08f.b 235 449 24 7.1
MGMY003DA03F.B mgmy003dA03f.b 90 572 24 7.1
MGCM002CB01F.B mgcm002cB01f.b 23 535 24 7.1
MGCM001DH03F.B mgcm001dH03f.b 21 437 24 7.1
MGAP007BC07F.B mgap007bC07f.b 25 569 24 7.1
MGAP007AC03F.B mgap007aC03f.b 19 532 24 7.1
>MGMY006DH11F.B mgmy006dH11f.b 22 478
Length = 391
Score = 24.3 bits (12), Expect = 7.1
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 152 cacccccatatt 163
||||||||||||
Sbjct: 267 cacccccatatt 256
>MGMY006AB10F.B mgmy006aB10f.b 2 481
Length = 435
Score = 24.3 bits (12), Expect = 7.1
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 190 ctcaatcttctt 201
||||||||||||
Sbjct: 259 ctcaatcttctt 248
>MGMY006AB03F.B mgmy006aB03f.b 31 499
Length = 416
Score = 24.3 bits (12), Expect = 7.1
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 190 ctcaatcttctt 201
||||||||||||
Sbjct: 260 ctcaatcttctt 249
>MGMY005CH08F.B mgmy005cH08f.b 25 468
Length = 379
Score = 24.3 bits (12), Expect = 7.1
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 122 ttgctggctttg 133
||||||||||||
Sbjct: 272 ttgctggctttg 283
>MGMY005AE08F.B mgmy005aE08f.b 235 449
Length = 214
Score = 24.3 bits (12), Expect = 7.1
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 190 ctcaatcttctt 201
||||||||||||
Sbjct: 45 ctcaatcttctt 34
>MGMY003DA03F.B mgmy003dA03f.b 90 572
Length = 482
Score = 24.3 bits (12), Expect = 7.1
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 145 ctacttgcaccc 156
||||||||||||
Sbjct: 342 ctacttgcaccc 353
>MGCM002CB01F.B mgcm002cB01f.b 23 535
Length = 441
Score = 24.3 bits (12), Expect = 7.1
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 85 ctcttgggccac 96
||||||||||||
Sbjct: 221 ctcttgggccac 210
>MGCM001DH03F.B mgcm001dH03f.b 21 437
Length = 349
Score = 24.3 bits (12), Expect = 7.1
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 114 tggatatgttgc 125
||||||||||||
Sbjct: 55 tggatatgttgc 66
>MGAP007BC07F.B mgap007bC07f.b 25 569
Length = 492
Score = 24.3 bits (12), Expect = 7.1
Identities = 15/16 (93%)
Strand = Plus / Plus
Query: 7 ggctccgtcaatatcc 22
||||||||||| ||||
Sbjct: 109 ggctccgtcaagatcc 124
>MGAP007AC03F.B mgap007aC03f.b 19 532
Length = 452
Score = 24.3 bits (12), Expect = 7.1
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 114 tggatatgttgc 125
||||||||||||
Sbjct: 416 tggatatgttgc 427
Database: /phillip/Ncr/MgIFAFSall
Posted date: Feb 13, 2002 12:25 PM
Number of letters in database: 785,635
Number of sequences in database: 2061
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 57
Number of Sequences: 2061
Number of extensions: 57
Number of successful extensions: 10
Number of sequences better than 10.0: 10
length of query: 203
length of database: 785,635
effective HSP length: 13
effective length of query: 190
effective length of database: 758,842
effective search space: 144179980
effective search space used: 144179980
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 12 (24.3 bits)