BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast/FgrNCT3P_1613_A01_A01Z5T
.seq
(653 letters)
Database: /phillip/Ncr/MgIFAFSall
2061 sequences; 785,635 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGMY004AA04F.B mgmy004aA04f.b 26 654 28 1.5
MGMY003BC09F.B mgmy003bC09f.b 19 475 28 1.5
MGMY001AE03F.B mgmy001aE03f.b 152 721 28 1.5
MGAP008CH10F.B mgap008cH10f.b 25 589 28 1.5
MGMY004DG05F.B mgmy004dG05f.b 31 172 26 6.0
MGMY004DB09F.B mgmy004dB09f.b 41 434 26 6.0
MGMY003DE02F.B mgmy003dE02f.b 90 637 26 6.0
MGMY003CH02F.B mgmy003cH02f.b 38 401 26 6.0
MGMY003BG03F.B mgmy003bG03f.b 28 563 26 6.0
MGMY003AA07F.B mgmy003aA07f.b 2 437 26 6.0
MGMY002DH06F.B mgmy002dH06f.b 29 537 26 6.0
MGCM002CA08F.B mgcm002cA08f.b 1 495 26 6.0
MGAP007CF08F.B mgap007cF08f.b 16 478 26 6.0
MGAP007AF09F.B mgap007aF09f.b 16 444 26 6.0
MGAP007AD07F.B mgap007aD07f.b 16 643 26 6.0
>MGMY004AA04F.B mgmy004aA04f.b 26 654
Length = 565
Score = 28.2 bits (14), Expect = 1.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 626 caggctccggccca 639
||||||||||||||
Sbjct: 145 caggctccggccca 158
>MGMY003BC09F.B mgmy003bC09f.b 19 475
Length = 408
Score = 28.2 bits (14), Expect = 1.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 626 caggctccggccca 639
||||||||||||||
Sbjct: 178 caggctccggccca 191
>MGMY001AE03F.B mgmy001aE03f.b 152 721
Length = 531
Score = 28.2 bits (14), Expect = 1.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 108 ctgccgttgctgaa 121
||||||||||||||
Sbjct: 336 ctgccgttgctgaa 323
>MGAP008CH10F.B mgap008cH10f.b 25 589
Length = 521
Score = 28.2 bits (14), Expect = 1.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 535 ggatctgaagaacc 548
||||||||||||||
Sbjct: 103 ggatctgaagaacc 90
>MGMY004DG05F.B mgmy004dG05f.b 31 172
Length = 110
Score = 26.3 bits (13), Expect = 6.0
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 55 gattttctcggcc 67
|||||||||||||
Sbjct: 89 gattttctcggcc 77
>MGMY004DB09F.B mgmy004dB09f.b 41 434
Length = 373
Score = 26.3 bits (13), Expect = 6.0
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 375 ggtcgaattcggg 387
|||||||||||||
Sbjct: 116 ggtcgaattcggg 104
>MGMY003DE02F.B mgmy003dE02f.b 90 637
Length = 547
Score = 26.3 bits (13), Expect = 6.0
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 444 tcctcgaggcgtt 456
|||||||||||||
Sbjct: 71 tcctcgaggcgtt 83
>MGMY003CH02F.B mgmy003cH02f.b 38 401
Length = 363
Score = 26.3 bits (13), Expect = 6.0
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 51 aggagattttctc 63
|||||||||||||
Sbjct: 20 aggagattttctc 8
>MGMY003BG03F.B mgmy003bG03f.b 28 563
Length = 483
Score = 26.3 bits (13), Expect = 6.0
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 439 cggattcctcgag 451
|||||||||||||
Sbjct: 82 cggattcctcgag 70
>MGMY003AA07F.B mgmy003aA07f.b 2 437
Length = 397
Score = 26.3 bits (13), Expect = 6.0
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 427 gttcagcgtctac 439
|||||||||||||
Sbjct: 152 gttcagcgtctac 164
>MGMY002DH06F.B mgmy002dH06f.b 29 537
Length = 464
Score = 26.3 bits (13), Expect = 6.0
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 256 cgagcaggatctt 268
|||||||||||||
Sbjct: 199 cgagcaggatctt 187
>MGCM002CA08F.B mgcm002cA08f.b 1 495
Length = 438
Score = 26.3 bits (13), Expect = 6.0
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 30 tggccaagcagct 42
|||||||||||||
Sbjct: 259 tggccaagcagct 271
>MGAP007CF08F.B mgap007cF08f.b 16 478
Length = 379
Score = 26.3 bits (13), Expect = 6.0
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 522 ttttgacaacggt 534
|||||||||||||
Sbjct: 248 ttttgacaacggt 260
>MGAP007AF09F.B mgap007aF09f.b 16 444
Length = 365
Score = 26.3 bits (13), Expect = 6.0
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 606 acgaccaggatgacttc 622
||||| |||||||||||
Sbjct: 146 acgacgaggatgacttc 162
>MGAP007AD07F.B mgap007aD07f.b 16 643
Length = 566
Score = 26.3 bits (13), Expect = 6.0
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 249 agtttggcgagca 261
|||||||||||||
Sbjct: 200 agtttggcgagca 188
Database: /phillip/Ncr/MgIFAFSall
Posted date: Feb 13, 2002 12:25 PM
Number of letters in database: 785,635
Number of sequences in database: 2061
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 306
Number of Sequences: 2061
Number of extensions: 306
Number of successful extensions: 102
Number of sequences better than 10.0: 15
length of query: 653
length of database: 785,635
effective HSP length: 14
effective length of query: 639
effective length of database: 756,781
effective search space: 483583059
effective search space used: 483583059
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)