BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1605_B05_C09ZS5.seq
(388 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CL674CT757CN1526 cl674ct757cn1526 COVERAGE:0.98; CRAWID: 1; TOTA... 98 4e-21
MGCS008BD03F.B mgcs008bD03f.b LENGTH:427bp ; DIRECTION:0 ; CLONE... 34 0.047
CL512CT586CN1296 cl512ct586cn1296 COVERAGE:0.99; CRAWID: 1; TOTA... 34 0.047
MGCS010BC03F.B mgcs010bC03f.b LENGTH:525bp ; DIRECTION:0 ; CLONE... 32 0.19
CL936CT1035CN1815 cl936ct1035cn1815 COVERAGE:1.0; CRAWID: 1; TOT... 32 0.19
CL905CT1004CN1783 cl905ct1004cn1783 COVERAGE:0.99; CRAWID: 1; TO... 32 0.19
CL262CT308CN735 cl262ct308cn735 COVERAGE:0.96; CRAWID: 1; TOTAL_... 30 0.73
MGNS001BF09F.B mgns001bF09f.b LENGTH:523bp ; DIRECTION:0 ; CLONE... 28 2.9
GI3391782G gi3391782g LENGTH:807bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 2.9
GI3391626G gi3391626g LENGTH:1004bp ; DIRECTION:0 ; CLONE: n/a ;... 28 2.9
GI14181235 gi14181235 LENGTH:560bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 2.9
CL890CT989CN1767 cl890ct989cn1767 COVERAGE:0.98; CRAWID: 1; TOTA... 28 2.9
CL651CT733CN1500 cl651ct733cn1500 COVERAGE:0.99; CRAWID: 1; TOTA... 28 2.9
CL425CT493CN1116 cl425ct493cn1116 COVERAGE:1.0; CRAWID: 2; TOTAL... 28 2.9
CL356CT419CN937 cl356ct419cn937 COVERAGE:0.98; CRAWID: 1; TOTAL_... 28 2.9
CL293CT345CN802 cl293ct345cn802 COVERAGE:0.99; CRAWID: 1; TOTAL_... 28 2.9
CL270CT321CN766 cl270ct321cn766 COVERAGE:0.99; CRAWID: 1; TOTAL_... 28 2.9
CL1441CT1545CN2341 cl1441ct1545cn2341 COVERAGE:0.98; CRAWID: 1; ... 28 2.9
CL1325CT1428CN2220 cl1325ct1428cn2220 COVERAGE:0.98; CRAWID: 1; ... 28 2.9
CL1140CT1243CN2032 cl1140ct1243cn2032 COVERAGE:0.99; CRAWID: 1; ... 28 2.9
CL1058CT1159CN1945 cl1058ct1159cn1945 COVERAGE:1.0; CRAWID: 1; T... 28 2.9
CL1034CT1135CN1918 cl1034ct1135cn1918 COVERAGE:0.97; CRAWID: 1; ... 28 2.9
>CL674CT757CN1526 cl674ct757cn1526 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:14; ESTS:mgap007bC10f.b,mg
Length = 978
Score = 97.6 bits (49), Expect = 4e-21
Identities = 73/81 (90%)
Strand = Plus / Plus
Query: 182 ctcgtaaaccgcattcagttcggcggtgacgaagttgtcaaggccaaggacggtgctggt 241
||||| |||||| | |||||||| |||||||| || |||||||||||||||||||| |||
Sbjct: 777 ctcgtcaaccgcgtccagttcggtggtgacgaggtcgtcaaggccaaggacggtgccggt 836
Query: 242 tccgccaccctgtccatggcc 262
||||||||||| |||||||||
Sbjct: 837 tccgccaccctctccatggcc 857
Score = 60.0 bits (30), Expect = 8e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 1 ctttggtgtcaccaccctcgacatcgtccgtgcc 34
|||||||||||||||||||||| |||||||||||
Sbjct: 608 ctttggtgtcaccaccctcgacgtcgtccgtgcc 641
Score = 34.2 bits (17), Expect = 0.047
Identities = 29/33 (87%)
Strand = Plus / Plus
Query: 104 cactctggcgagactattgttcccctcttcagc 136
|||||||| | ||| || |||||||||||||||
Sbjct: 708 cactctggtgtgaccatcgttcccctcttcagc 740
>MGCS008BD03F.B mgcs008bD03f.b LENGTH:427bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 427
Score = 34.2 bits (17), Expect = 0.047
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 9 tcaccaccctcgacatc 25
|||||||||||||||||
Sbjct: 396 tcaccaccctcgacatc 412
>CL512CT586CN1296 cl512ct586cn1296 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:7; ESTS:mgns001aA01f.b,mgn
Length = 1309
Score = 34.2 bits (17), Expect = 0.047
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 201 tcggcggtgacgaagtt 217
|||||||||||||||||
Sbjct: 807 tcggcggtgacgaagtt 791
>MGCS010BC03F.B mgcs010bC03f.b LENGTH:525bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 525
Score = 32.2 bits (16), Expect = 0.19
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 368 gccattgctaaggaaa 383
||||||||||||||||
Sbjct: 484 gccattgctaaggaaa 469
>CL936CT1035CN1815 cl936ct1035cn1815 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgmy006aD06f.b,mgn
Length = 729
Score = 32.2 bits (16), Expect = 0.19
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 7 tgtcaccaccctcgacatcg 26
|||||||||||| |||||||
Sbjct: 579 tgtcaccacccttgacatcg 560
>CL905CT1004CN1783 cl905ct1004cn1783 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:4; ESTS:mgmy004dD06f.b,mg
Length = 767
Score = 32.2 bits (16), Expect = 0.19
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 3 ttggtgtcaccaccctcgac 22
|||||| |||||||||||||
Sbjct: 565 ttggtgccaccaccctcgac 546
>CL262CT308CN735 cl262ct308cn735 COVERAGE:0.96; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi14181004,gi339164
Length = 879
Score = 30.2 bits (15), Expect = 0.73
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 282 ccgagaaggttctcc 296
|||||||||||||||
Sbjct: 297 ccgagaaggttctcc 283
>MGNS001BF09F.B mgns001bF09f.b LENGTH:523bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 523
Score = 28.2 bits (14), Expect = 2.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 242 tccgccaccctgtc 255
||||||||||||||
Sbjct: 523 tccgccaccctgtc 510
>GI3391782G gi3391782g LENGTH:807bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 807
Score = 28.2 bits (14), Expect = 2.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 88 ccccgtcattggtg 101
||||||||||||||
Sbjct: 298 ccccgtcattggtg 311
>GI3391626G gi3391626g LENGTH:1004bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 1004
Score = 28.2 bits (14), Expect = 2.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 218 gtcaaggccaagga 231
||||||||||||||
Sbjct: 453 gtcaaggccaagga 440
>GI14181235 gi14181235 LENGTH:560bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 560
Score = 28.2 bits (14), Expect = 2.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 306 agggcgagaagggc 319
||||||||||||||
Sbjct: 378 agggcgagaagggc 391
>CL890CT989CN1767 cl890ct989cn1767 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:8; ESTS:mgmy004aB10f.b,mgc
Length = 616
Score = 28.2 bits (14), Expect = 2.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 83 accatccccgtcat 96
||||||||||||||
Sbjct: 489 accatccccgtcat 502
>CL651CT733CN1500 cl651ct733cn1500 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi2537261g,gi25372
Length = 2031
Score = 28.2 bits (14), Expect = 2.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 302 gtcaagggcgagaa 315
||||||||||||||
Sbjct: 1466 gtcaagggcgagaa 1479
>CL425CT493CN1116 cl425ct493cn1116 COVERAGE:1.0; CRAWID: 2;
TOTAL_ESTS:1; ESTS:gi14180121; LENGTH:
Length = 795
Score = 28.2 bits (14), Expect = 2.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 201 tcggcggtgacgaa 214
||||||||||||||
Sbjct: 101 tcggcggtgacgaa 88
>CL356CT419CN937 cl356ct419cn937 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:4; ESTS:gi14180690,gi339179
Length = 826
Score = 28.2 bits (14), Expect = 2.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 110 ggcgagactattgt 123
||||||||||||||
Sbjct: 463 ggcgagactattgt 476
>CL293CT345CN802 cl293ct345cn802 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi14180921,mgcs006a
Length = 723
Score = 28.2 bits (14), Expect = 2.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 82 gaccatccccgtca 95
||||||||||||||
Sbjct: 410 gaccatccccgtca 423
>CL270CT321CN766 cl270ct321cn766 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:36; ESTS:gi14180984,gi25373
Length = 1538
Score = 28.2 bits (14), Expect = 2.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 51 agatcactggcaag 64
||||||||||||||
Sbjct: 543 agatcactggcaag 556
>CL1441CT1545CN2341 cl1441ct1545cn2341 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcs006cF07f.b,m
Length = 675
Score = 28.2 bits (14), Expect = 2.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 230 gacggtgctggttc 243
||||||||||||||
Sbjct: 348 gacggtgctggttc 335
>CL1325CT1428CN2220 cl1325ct1428cn2220 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgns007aB03f.b,m
Length = 695
Score = 28.2 bits (14), Expect = 2.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 299 gccgtcaagggcgagaag 316
|||||| |||||||||||
Sbjct: 244 gccgtccagggcgagaag 227
>CL1140CT1243CN2032 cl1140ct1243cn2032 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:4; ESTS:mgcm005bC01f.b,m
Length = 572
Score = 28.2 bits (14), Expect = 2.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 303 tcaagggcgagaag 316
||||||||||||||
Sbjct: 461 tcaagggcgagaag 474
>CL1058CT1159CN1945 cl1058ct1159cn1945 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcm003aD02f.b,mg
Length = 436
Score = 28.2 bits (14), Expect = 2.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 300 ccgtcaagggcgag 313
||||||||||||||
Sbjct: 203 ccgtcaagggcgag 216
>CL1034CT1135CN1918 cl1034ct1135cn1918 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:7; ESTS:mgcm002cB06f.b,m
Length = 680
Score = 28.2 bits (14), Expect = 2.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 215 gttgtcaaggccaa 228
||||||||||||||
Sbjct: 512 gttgtcaaggccaa 525
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 694
Number of Sequences: 4717
Number of extensions: 694
Number of successful extensions: 181
Number of sequences better than 10.0: 22
length of query: 388
length of database: 2,543,711
effective HSP length: 15
effective length of query: 373
effective length of database: 2,472,956
effective search space: 922412588
effective search space used: 922412588
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)