BLASTN 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1605_B11_C21ZS5.seq
         (473 letters)

Database: /phillip/Ncr/Mgr_IFAFSGB_nr
           4717 sequences; 2,543,711 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

MGNS008DA06F.B mgns008dA06f.b LENGTH:468bp ; DIRECTION:0 ; CLONE...    28  3.6
MGCM008CE02F.B mgcm008cE02f.b LENGTH:489bp ; DIRECTION:0 ; CLONE...    28  3.6
MGCM003AF12F.B mgcm003aF12f.b LENGTH:268bp ; DIRECTION:0 ; CLONE...    28  3.6
GI14180433 gi14180433 LENGTH:717bp ; DIRECTION:0 ; CLONE: n/a ; ...    28  3.6
CL973CT1074CN1855 cl973ct1074cn1855 COVERAGE:0.99; CRAWID: 1; TO...    28  3.6
CL651CT733CN1500 cl651ct733cn1500 COVERAGE:0.99; CRAWID: 1; TOTA...    28  3.6
CL1383CT1486CN2281 cl1383ct1486cn2281 COVERAGE:0.99; CRAWID: 1; ...    28  3.6
CL1146CT1249CN2038 cl1146ct1249cn2038 COVERAGE:0.99; CRAWID: 1; ...    28  3.6

>MGNS008DA06F.B mgns008dA06f.b LENGTH:468bp ; DIRECTION:0 ; CLONE:
           n/a ; CLONELIB: n/a ; TISSUE:
          Length = 468

 Score = 28.2 bits (14), Expect = 3.6
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 282 actgttttgacatc 295
           ||||||||||||||
Sbjct: 441 actgttttgacatc 428



>MGCM008CE02F.B mgcm008cE02f.b LENGTH:489bp ; DIRECTION:0 ; CLONE:
           n/a ; CLONELIB: n/a ; TISSUE:
          Length = 489

 Score = 28.2 bits (14), Expect = 3.6
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 181 caagtccttctctc 194
           ||||||||||||||
Sbjct: 77  caagtccttctctc 90



>MGCM003AF12F.B mgcm003aF12f.b LENGTH:268bp ; DIRECTION:0 ; CLONE:
           n/a ; CLONELIB: n/a ; TISSUE:
          Length = 268

 Score = 28.2 bits (14), Expect = 3.6
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 452 gcttaattgacagg 465
           ||||||||||||||
Sbjct: 81  gcttaattgacagg 68



>GI14180433 gi14180433 LENGTH:717bp ; DIRECTION:0 ; CLONE: n/a ;
           CLONELIB: n/a ; TISSUE:[]
          Length = 717

 Score = 28.2 bits (14), Expect = 3.6
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                             
Query: 335 acgccagtcaatcttcta 352
           ||||||||||| ||||||
Sbjct: 565 acgccagtcaaccttcta 548



>CL973CT1074CN1855 cl973ct1074cn1855 COVERAGE:0.99; CRAWID: 1;
           TOTAL_ESTS:9; ESTS:mgcm001bD05f.b,mg
          Length = 730

 Score = 28.2 bits (14), Expect = 3.6
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 132 gcttgcgacacatg 145
           ||||||||||||||
Sbjct: 307 gcttgcgacacatg 320



>CL651CT733CN1500 cl651ct733cn1500 COVERAGE:0.99; CRAWID: 1;
            TOTAL_ESTS:2; ESTS:gi2537261g,gi25372
          Length = 2031

 Score = 28.2 bits (14), Expect = 3.6
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                          
Query: 20   catttccaaaacaa 33
            ||||||||||||||
Sbjct: 1977 catttccaaaacaa 1964



>CL1383CT1486CN2281 cl1383ct1486cn2281 COVERAGE:0.99; CRAWID: 1;
           TOTAL_ESTS:3; ESTS:mgcs002aC07f.b,m
          Length = 999

 Score = 28.2 bits (14), Expect = 3.6
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 363 tacactacctatat 376
           ||||||||||||||
Sbjct: 659 tacactacctatat 672



>CL1146CT1249CN2038 cl1146ct1249cn2038 COVERAGE:0.99; CRAWID: 1;
           TOTAL_ESTS:2; ESTS:mgcm005bH06f.b,m
          Length = 595

 Score = 28.2 bits (14), Expect = 3.6
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 223 tgtttcagtcctta 236
           ||||||||||||||
Sbjct: 187 tgtttcagtcctta 200



  Database: /phillip/Ncr/Mgr_IFAFSGB_nr
    Posted date:  Mar 22, 2002  5:31 PM
  Number of letters in database: 2,543,711
  Number of sequences in database:  4717
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 422
Number of Sequences: 4717
Number of extensions: 422
Number of successful extensions: 107
Number of sequences better than 10.0: 8
length of query: 473
length of database: 2,543,711
effective HSP length: 15
effective length of query: 458
effective length of database: 2,472,956
effective search space: 1132613848
effective search space used: 1132613848
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)