TBLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1605_B11_C21ZS5.seq
(473 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CL385CT450CN978 cl385ct450cn978 COVERAGE:0.97; CRAWID: 1; TOTAL_... 28 0.30
CL863CT961CN1736 cl863ct961cn1736 COVERAGE:0.99; CRAWID: 1; TOTA... 26 1.1
MGCM008BG02F.B mgcm008bG02f.b LENGTH:239bp ; DIRECTION:0 ; CLONE... 26 1.1
GI3391431G gi3391431g LENGTH:868bp ; DIRECTION:0 ; CLONE: n/a ; ... 26 1.1
GI3391493G gi3391493g LENGTH:1021bp ; DIRECTION:0 ; CLONE: n/a ;... 26 1.5
GI14180874 gi14180874 LENGTH:651bp ; DIRECTION:0 ; CLONE: n/a ; ... 26 1.5
MGCM001DB03F.B mgcm001dB03f.b LENGTH:373bp ; DIRECTION:0 ; CLONE... 26 1.5
MGCS003AE11F.B mgcs003aE11f.b LENGTH:531bp ; DIRECTION:0 ; CLONE... 26 1.5
MGNS008AB06F.B mgns008aB06f.b LENGTH:320bp ; DIRECTION:0 ; CLONE... 25 2.0
MGNS002AD04F.B mgns002aD04f.b LENGTH:356bp ; DIRECTION:0 ; CLONE... 25 2.0
GI14180464 gi14180464 LENGTH:732bp ; DIRECTION:0 ; CLONE: n/a ; ... 25 2.8
MGCM007AA07F.B mgcm007aA07f.b LENGTH:480bp ; DIRECTION:0 ; CLONE... 24 3.9
GI3391944G gi3391944g LENGTH:804bp ; DIRECTION:0 ; CLONE: n/a ; ... 24 3.9
CL286CT338CN792 cl286ct338cn792 COVERAGE:0.98; CRAWID: 1; TOTAL_... 24 3.9
GI14181093 gi14181093 LENGTH:979bp ; DIRECTION:0 ; CLONE: n/a ; ... 24 3.9
CL480CT553CN1233 cl480ct553cn1233 COVERAGE:0.99; CRAWID: 1; TOTA... 24 3.9
GI3392303G gi3392303g LENGTH:814bp ; DIRECTION:0 ; CLONE: n/a ; ... 24 5.3
CL422CT490CN1108 cl422ct490cn1108 COVERAGE:1.0; CRAWID: 1; TOTAL... 24 5.3
CL34CT40CN139 cl34ct40cn139 COVERAGE:1.0; CRAWID: 2; TOTAL_ESTS:... 24 5.3
GI14180472 gi14180472 LENGTH:738bp ; DIRECTION:0 ; CLONE: n/a ; ... 22 6.9
CL402CT468CN1044 cl402ct468cn1044 COVERAGE:0.98; CRAWID: 2; TOTA... 24 7.3
CL223CT265CN663 cl223ct265cn663 COVERAGE:1.0; CRAWID: 1; TOTAL_E... 24 7.3
GI3391585G gi3391585g LENGTH:994bp ; DIRECTION:0 ; CLONE: n/a ; ... 24 7.3
GI3391356G gi3391356g LENGTH:1019bp ; DIRECTION:0 ; CLONE: n/a ;... 24 7.3
CL421CT489CN1104 cl421ct489cn1104 COVERAGE:1.0; CRAWID: 1; TOTAL... 24 7.3
CL1197CT1300CN2089 cl1197ct1300cn2089 COVERAGE:0.99; CRAWID: 1; ... 24 7.3
CL1064CT1165CN1952 cl1064ct1165cn1952 COVERAGE:1.0; CRAWID: 1; T... 24 7.3
MGAP007BE06F.B mgap007bE06f.b LENGTH:455bp ; DIRECTION:0 ; CLONE... 24 7.3
GI14181109 gi14181109 LENGTH:657bp ; DIRECTION:0 ; CLONE: n/a ; ... 23 10.0
CL207CT247CN633 cl207ct247cn633 COVERAGE:0.99; CRAWID: 1; TOTAL_... 23 10.0
MGNS002AA04F.B mgns002aA04f.b LENGTH:238bp ; DIRECTION:0 ; CLONE... 23 10.0
GI3392266G gi3392266g LENGTH:918bp ; DIRECTION:0 ; CLONE: n/a ; ... 23 10.0
MGCS002DE04F.B mgcs002dE04f.b LENGTH:496bp ; DIRECTION:0 ; CLONE... 23 10.0
MGCS011AF03F.B mgcs011aF03f.b LENGTH:564bp ; DIRECTION:0 ; CLONE... 23 10.0
MGCS001DE10F.B mgcs001dE10f.b LENGTH:187bp ; DIRECTION:0 ; CLONE... 23 10.0
MGCM001BG08F.B mgcm001bG08f.b LENGTH:408bp ; DIRECTION:0 ; CLONE... 23 10.0
MGCS005AE01F.B mgcs005aE01f.b LENGTH:503bp ; DIRECTION:0 ; CLONE... 23 10.0
GI3391909G gi3391909g LENGTH:743bp ; DIRECTION:0 ; CLONE: n/a ; ... 23 10.0
GI14181544 gi14181544 LENGTH:671bp ; DIRECTION:0 ; CLONE: n/a ; ... 23 10.0
CL113CT146CN437 cl113ct146cn437 COVERAGE:0.99; CRAWID: 1; TOTAL_... 23 10.0
>CL385CT450CN978 cl385ct450cn978 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi14180463,mgap007a
Length = 763
Score = 28.1 bits (55), Expect = 0.30
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1 / -2
Query: 43 TDLYCDLLAALNNRGMLCCTGVSRKFSSSLLATHGADRCI 162
+DL+ ++ + ML G RK + S + HG RC+
Sbjct: 213 SDLFVSMICWRSAETMLGDVGGPRKAARSWVVAHGCSRCL 94
>CL863CT961CN1736 cl863ct961cn1736 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:6; ESTS:mgmy003bE06f.b,mgc
Length = 951
Score = 26.3 bits (51), Expect = 1.1
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +1 / -3
Query: 391 PIDIAPKPIWID*KYPCIALSLID 462
P+D+AP+P+ + + +AL +ID
Sbjct: 655 PVDLAPQPVILTRQGAVLALQVID 584
>MGCM008BG02F.B mgcm008bG02f.b LENGTH:239bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 239
Score = 26.3 bits (51), Expect = 1.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1 / -1
Query: 179 YNRTTEMHLSAPCVASKLELNFRETPVQHS 90
Y+R S PC+AS+ ++ R + VQ S
Sbjct: 170 YSRCDTSQASTPCLASRPGISARRSAVQAS 81
>GI3391431G gi3391431g LENGTH:868bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 868
Score = 26.3 bits (51), Expect = 1.1
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2 / +3
Query: 257 RIWPRHLNYCFDILLR 304
R WPR L C+D L R
Sbjct: 126 RDWPRFLGQCYDFLER 173
>GI3391493G gi3391493g LENGTH:1021bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 1021
Score = 25.8 bits (50), Expect = 1.5
Identities = 12/27 (44%), Positives = 13/27 (47%)
Frame = +1 / -3
Query: 94 CCTGVSRKFSSSLLATHGADRCISVVR 174
CCTGV + S A RCI VR
Sbjct: 404 CCTGVQKPSWSISAAARDYTRCILGVR 324
>GI14180874 gi14180874 LENGTH:651bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 651
Score = 25.8 bits (50), Expect = 1.5
Identities = 6/17 (35%), Positives = 15/17 (87%)
Frame = +2 / +2
Query: 338 PVNLLSTCIHYLYASLR 388
P++ LS+C+H+ ++S++
Sbjct: 506 PISHLSSCLHFTFSSIK 556
>MGCM001DB03F.B mgcm001dB03f.b LENGTH:373bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 373
Score = 25.8 bits (50), Expect = 1.5
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2 / +1
Query: 131 CLRHMERIDASPSCDYTKSFSRDRSSRI 214
C RH R ASPS TK F R+S +
Sbjct: 1 CTRHRLRQTASPSYYGTKPFLARRNSTL 84
>MGCS003AE11F.B mgcs003aE11f.b LENGTH:531bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 531
Score = 25.8 bits (50), Expect = 1.5
Identities = 11/43 (25%), Positives = 22/43 (50%)
Frame = +1 / -2
Query: 37 EETDLYCDLLAALNNRGMLCCTGVSRKFSSSLLATHGADRCIS 165
E+ DL+ L + G++ G + + +AT G ++C+S
Sbjct: 242 EDRDLFGRHLLGKRDDGLVALDGADEGQADTGVATRGLNQCVS 114
>MGNS008AB06F.B mgns008aB06f.b LENGTH:320bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 320
Score = 25.3 bits (49), Expect = 2.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2 / +3
Query: 332 ETPVNLLSTCIHYLYASLRYLSTLP 406
E P+ LLST HY A+ + LP
Sbjct: 117 EKPIELLSTSSHYDIATAQLWCRLP 191
>MGNS002AD04F.B mgns002aD04f.b LENGTH:356bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 356
Score = 25.3 bits (49), Expect = 2.0
Identities = 12/39 (30%), Positives = 15/39 (37%)
Frame = -1 / +2
Query: 314 YSVGEVRCQNSNSSVSAIFVFKHPSF*GLKHDPQF*MTC 198
Y+ RC +S V + H F*GL P C
Sbjct: 161 YTAAYARCHLPHSDVPRLLPLPHQGF*GLHSYPHEATNC 277
>GI14180464 gi14180464 LENGTH:732bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 732
Score = 24.9 bits (48), Expect = 2.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2 / -3
Query: 305 LQSTSYVERETPVNLLSTCI 364
L STSY+ NLLS C+
Sbjct: 313 LMSTSYISLS*TTNLLSLCL 254
>MGCM007AA07F.B mgcm007aA07f.b LENGTH:480bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 480
Score = 24.4 bits (47), Expect = 3.9
Identities = 7/15 (46%), Positives = 12/15 (79%)
Frame = +3 / -2
Query: 93 MLYRCFTEVQLEFAC 137
+ ++CFTE +L+ AC
Sbjct: 92 IFWKCFTECRLDAAC 48
>GI3391944G gi3391944g LENGTH:804bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 804
Score = 24.4 bits (47), Expect = 3.9
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = +1 / +3
Query: 337 ASQSSIYLHTLPICLSKVP 393
A QSS+Y +P C +P
Sbjct: 69 AKQSSLYQQRIPTCAKYIP 125
>CL286CT338CN792 cl286ct338cn792 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi14180942,gi339144
Length = 928
Score = 24.4 bits (47), Expect = 3.9
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2 / -3
Query: 271 SRPYSCLSTLLSKD*NMTRNS 209
SR S +S L KD*++TRN+
Sbjct: 782 SRGNSIISKKLDKD*HLTRNA 720
>GI14181093 gi14181093 LENGTH:979bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 979
Score = 24.4 bits (47), Expect = 3.9
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -1 / -3
Query: 182 WYNRTTEMHLSAPCVASKL 126
WY T + ++APC A L
Sbjct: 908 WYRLVTRVGVAAPCCARTL 852
>CL480CT553CN1233 cl480ct553cn1233 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:6; ESTS:gi2537287g,gi25372
Length = 1531
Score = 24.4 bits (47), Expect = 3.9
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +3 / -1
Query: 174 IIPSPSLETGHLELRVMFQSLERRVLKHEYGRDT*ITVLTSYFAYRV 314
++ + + G LEL Q L R+V + E G D + +L RV
Sbjct: 658 VVGTDTSSDGELELLGASQPLSRKVSRVEGGGDDDLGILQLLVEGRV 518
>GI3392303G gi3392303g LENGTH:814bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 814
Score = 24.0 bits (46), Expect = 5.3
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1 / +1
Query: 191 RRTWYNRTTEMHLSAPCVA 135
RRTW T M PCVA
Sbjct: 439 RRTWAG*CTGMPKMCPCVA 495
>CL422CT490CN1108 cl422ct490cn1108 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi14180403,mgap010c
Length = 1027
Score = 24.0 bits (46), Expect = 5.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2 / +2
Query: 329 RETPVNLLSTCIHYLYASLR 388
+ETP + STC+ L ASL+
Sbjct: 557 QETPTSTPSTCLLCLRASLK 616
>CL34CT40CN139 cl34ct40cn139 COVERAGE:1.0; CRAWID: 2; TOTAL_ESTS:1;
ESTS:gi3392248g; LENGTH:827
Length = 827
Score = 24.0 bits (46), Expect = 5.3
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = +2 / +3
Query: 353 STCIHYLYASLRYLSTL 403
STC+++LY LR + +
Sbjct: 222 STCVYFLYTHLRAVEAI 272
>GI14180472 gi14180472 LENGTH:738bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 738
Score = 21.7 bits (41), Expect(2) = 6.9
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2 / -2
Query: 95 VVPVFHGSSARVCLRHMERIDASPSCDYTKSFS 193
VVP A VC++H+ R + + SFS
Sbjct: 581 VVPPSLSPMAAVCMQHVGRRTKHGAMRFPVSFS 483
Score = 19.8 bits (37), Expect(2) = 6.9
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +1 / -3
Query: 52 YCDLLAALNNRG 87
YC + A LN RG
Sbjct: 670 YCLIKAGLNRRG 635
>CL402CT468CN1044 cl402ct468cn1044 COVERAGE:0.98; CRAWID: 2;
TOTAL_ESTS:2; ESTS:gi14180399,gi14180
Length = 1128
Score = 23.5 bits (45), Expect = 7.3
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -3 / -3
Query: 420 PNRLWGNVDRY 388
PNRLW + RY
Sbjct: 112 PNRLWERLPRY 80
>CL223CT265CN663 cl223ct265cn663 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi14181125,mgap010cF
Length = 620
Score = 23.5 bits (45), Expect = 7.3
Identities = 7/13 (53%), Positives = 9/13 (68%)
Frame = +2 / -3
Query: 263 WPRHLNYCFDILL 301
W RH NY D++L
Sbjct: 534 WSRHANYVGDLIL 496
>GI3391585G gi3391585g LENGTH:994bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 994
Score = 23.5 bits (45), Expect = 7.3
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +2 / -1
Query: 158 ASPSCDYTKSFSRDRS 205
+S SC YT++F R R+
Sbjct: 460 SSHSCSYTEAFRRGRA 413
>GI3391356G gi3391356g LENGTH:1019bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 1019
Score = 23.5 bits (45), Expect = 7.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2 / +3
Query: 190 EGLGIIARRRCIYPLHVSQANSS 122
+ L +A RRCI LHV + + S
Sbjct: 471 DSLLYLACRRCIRHLHVGKTHGS 539
>CL421CT489CN1104 cl421ct489cn1104 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi14180264,mgap008d
Length = 891
Score = 23.5 bits (45), Expect = 7.3
Identities = 12/43 (27%), Positives = 20/43 (45%)
Frame = +2 / +2
Query: 314 TSYVERETPVNLLSTCIHYLYASLRYLSTLPQSLFGSIRNTHV 442
+SY + N+ S H+L+ S+ SLF ++ T V
Sbjct: 212 SSYAQTRNVENVYSVIPHFLHWSIHVTRQSGSSLFYGLQVTPV 340
>CL1197CT1300CN2089 cl1197ct1300cn2089 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcm007dF09f.b,m
Length = 518
Score = 23.5 bits (45), Expect = 7.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1 / +1
Query: 389 TLERHIGSVCK*IED*LASLVLRRKYSVGEVRC 291
T++ S K I D + + VL+RKY E C
Sbjct: 379 TVKYFAPSTIKDIGDRIWAKVLQRKYVFDENNC 477
>CL1064CT1165CN1952 cl1064ct1165cn1952 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcm003aG01f.b,mg
Length = 419
Score = 23.5 bits (45), Expect = 7.3
Identities = 7/22 (31%), Positives = 13/22 (58%)
Frame = +3 / +3
Query: 39 RNRLVLRSVSCSQQSRHAMLYR 104
+N LR++ CS+++R Y
Sbjct: 171 KNTWSLRTIKCSRRTRLGTTYC 236
>MGAP007BE06F.B mgap007bE06f.b LENGTH:455bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 455
Score = 23.5 bits (45), Expect = 7.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1 / +1
Query: 203 TCLERRTWYNRTTEMHLS 150
+CL+ T Y RTT +H S
Sbjct: 223 SCLQWCTAYRRTTRVHWS 276
>GI14181109 gi14181109 LENGTH:657bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 657
Score = 23.1 bits (44), Expect = 10.0
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2 / +1
Query: 8 KYLDHFQNNLKKPTCTAIC*LLSTIEAC 91
+ LDH ++ C A C*LL+ AC
Sbjct: 79 RQLDHPRH*Y*PTRCRACC*LLAARPAC 162
>CL207CT247CN633 cl207ct247cn633 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:5; ESTS:gi14181161,mgmy001c
Length = 860
Score = 23.1 bits (44), Expect = 10.0
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +1 / +3
Query: 94 CCTGVSRKFSSSLL 135
CCT SRKF LL
Sbjct: 804 CCTSPSRKFFPILL 845
>MGNS002AA04F.B mgns002aA04f.b LENGTH:238bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 238
Score = 23.1 bits (44), Expect = 10.0
Identities = 10/34 (29%), Positives = 16/34 (46%)
Frame = +2 / -2
Query: 134 LRHMERIDASPSCDYTKSFSRDRSSRIAGHVSVL 235
LRH++ A S + F S++ GH V+
Sbjct: 174 LRHLQSSSAGHSLKCSMRFVMQLQSQVLGHEEVV 73
>GI3392266G gi3392266g LENGTH:918bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 918
Score = 23.1 bits (44), Expect = 10.0
Identities = 11/24 (45%), Positives = 14/24 (57%)
Frame = -3 / +2
Query: 219 PAILDDLSREKDLV*SHDGDASIR 148
PAILD + D *SH +S+R
Sbjct: 353 PAILDQDLAKHDKA*SHQTASSVR 424
>MGCS002DE04F.B mgcs002dE04f.b LENGTH:496bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 496
Score = 23.1 bits (44), Expect = 10.0
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +2 / -1
Query: 170 CDYTKSFSRDRS 205
C YT++FSR R+
Sbjct: 298 CQYTRAFSRGRA 263
>MGCS011AF03F.B mgcs011aF03f.b LENGTH:564bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 564
Score = 23.1 bits (44), Expect = 10.0
Identities = 8/12 (66%), Positives = 10/12 (82%)
Frame = -2 / -1
Query: 277 QVSRPYSCLSTL 242
++SRPY CLS L
Sbjct: 504 ELSRPYHCLSGL 469
>MGCS001DE10F.B mgcs001dE10f.b LENGTH:187bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 187
Score = 23.1 bits (44), Expect = 10.0
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -3 / +2
Query: 42 FFRLFWKWSRYFDL 1
FF FW S+YF++
Sbjct: 26 FFFFFWGSSKYFEI 67
>MGCM001BG08F.B mgcm001bG08f.b LENGTH:408bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 408
Score = 23.1 bits (44), Expect = 10.0
Identities = 7/13 (53%), Positives = 9/13 (68%)
Frame = -3 / -1
Query: 48 VGFFRLFWKWSRY 10
V F LF +W+RY
Sbjct: 294 VWFSSLFLQWTRY 256
>MGCS005AE01F.B mgcs005aE01f.b LENGTH:503bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 503
Score = 23.1 bits (44), Expect = 10.0
Identities = 17/59 (28%), Positives = 22/59 (36%)
Frame = +1 / -1
Query: 52 YCDLLAALNNRGMLCCTGVSRKFSSSLLATHGADRCISVVRLYQVLLSRQVI*NCGSCF 228
YC + + G LC +S S + T R ISV SR * C + F
Sbjct: 485 YCGIPRSWAVSGQLCAGMISMSLSMTSSGTKLWRRSISVTYGLPSATSRNDW*TCSAVF 309
>GI3391909G gi3391909g LENGTH:743bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 743
Score = 23.1 bits (44), Expect = 10.0
Identities = 7/13 (53%), Positives = 11/13 (83%)
Frame = +1 / -1
Query: 55 CDLLAALNNRGML 93
CD+L+A NN+ M+
Sbjct: 404 CDILSAKNNQSMM 366
>GI14181544 gi14181544 LENGTH:671bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 671
Score = 23.1 bits (44), Expect = 10.0
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +1 / -1
Query: 214 CGSCFSP*KEG 246
CGSC P*K G
Sbjct: 320 CGSCGGP*KSG 288
>CL113CT146CN437 cl113ct146cn437 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:4; ESTS:gi14181377,mgns009a
Length = 1404
Score = 23.1 bits (44), Expect = 10.0
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -1 / +1
Query: 203 TCLERRTWYNRTTEMHLS 150
TC+E +T+Y T HL+
Sbjct: 334 TCVETQTFYMTTDSGHLA 387
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
0.318 0.135 0.401
Matrix: BLOSUM62
Number of Hits to DB: 2977342
Number of Sequences: 4717
Number of extensions: 39139
Number of successful extensions: 1271
Number of sequences better than 10.0: 60
length of query: 157
length of database: 847,903
effective HSP length: 39
effective length of query: 118
effective length of database: 663,940
effective search space: 78344920
effective search space used: 78344920
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 44 (23.1 bits)