BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1605_C02_E03ZS5.seq
(136 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGCM004CF12F.B mgcm004cF12f.b LENGTH:368bp ; DIRECTION:0 ; CLONE... 30 0.24
MGNS011AE11F.B mgns011aE11f.b LENGTH:416bp ; DIRECTION:0 ; CLONE... 28 0.95
MGMY004CC05F.B mgmy004cC05f.b LENGTH:416bp ; DIRECTION:0 ; CLONE... 28 0.95
MGAP010DH08F.B mgap010dH08f.b LENGTH:386bp ; DIRECTION:0 ; CLONE... 28 0.95
GI3391983G gi3391983g LENGTH:845bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 0.95
CL497CT571CN1267 cl497ct571cn1267 COVERAGE:1.0; CRAWID: 2; TOTAL... 28 0.95
CL146CT183CN504 cl146ct183cn504 COVERAGE:0.99; CRAWID: 1; TOTAL_... 28 0.95
CL1078CT1180CN1967 cl1078ct1180cn1967 COVERAGE:0.99; CRAWID: 1; ... 28 0.95
MGNS013BD04F.B mgns013bD04f.b LENGTH:367bp ; DIRECTION:0 ; CLONE... 26 3.8
MGCS003AE11F.B mgcs003aE11f.b LENGTH:531bp ; DIRECTION:0 ; CLONE... 26 3.8
MGCS002BH08F.B mgcs002bH08f.b LENGTH:433bp ; DIRECTION:0 ; CLONE... 26 3.8
MGCM006CG12F.B mgcm006cG12f.b LENGTH:483bp ; DIRECTION:0 ; CLONE... 26 3.8
GI14180710 gi14180710 LENGTH:652bp ; DIRECTION:0 ; CLONE: n/a ; ... 26 3.8
CL807CT898CN1672 cl807ct898cn1672 COVERAGE:0.99; CRAWID: 1; TOTA... 26 3.8
CL630CT708CN1465 cl630ct708cn1465 COVERAGE:0.98; CRAWID: 1; TOTA... 26 3.8
CL289CT341CN796 cl289ct341cn796 COVERAGE:0.99; CRAWID: 1; TOTAL_... 26 3.8
CL1043CT1144CN1927 cl1043ct1144cn1927 COVERAGE:0.98; CRAWID: 1; ... 26 3.8
>MGCM004CF12F.B mgcm004cF12f.b LENGTH:368bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 368
Score = 30.2 bits (15), Expect = 0.24
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 47 gcgaggagctcaaccctta 65
||||||||||||| |||||
Sbjct: 1 gcgaggagctcaagcctta 19
>MGNS011AE11F.B mgns011aE11f.b LENGTH:416bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 416
Score = 28.2 bits (14), Expect = 0.95
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 45 gggcgaggagctca 58
||||||||||||||
Sbjct: 264 gggcgaggagctca 277
>MGMY004CC05F.B mgmy004cC05f.b LENGTH:416bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 416
Score = 28.2 bits (14), Expect = 0.95
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 48 cgaggagctcaaccctta 65
|||||||||||| |||||
Sbjct: 363 cgaggagctcaagcctta 380
>MGAP010DH08F.B mgap010dH08f.b LENGTH:386bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 386
Score = 28.2 bits (14), Expect = 0.95
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 41 tcgtgggcgaggag 54
||||||||||||||
Sbjct: 73 tcgtgggcgaggag 86
>GI3391983G gi3391983g LENGTH:845bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 845
Score = 28.2 bits (14), Expect = 0.95
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 47 gcgaggagctcaac 60
||||||||||||||
Sbjct: 578 gcgaggagctcaac 591
>CL497CT571CN1267 cl497ct571cn1267 COVERAGE:1.0; CRAWID: 2;
TOTAL_ESTS:1; ESTS:gi3392158g; LENGTH:
Length = 870
Score = 28.2 bits (14), Expect = 0.95
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 19 catgtaagggttga 32
||||||||||||||
Sbjct: 444 catgtaagggttga 431
Score = 26.3 bits (13), Expect = 3.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 56 tcaacccttacat 68
|||||||||||||
Sbjct: 431 tcaacccttacat 443
>CL146CT183CN504 cl146ct183cn504 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi14181319,gi339228
Length = 973
Score = 28.2 bits (14), Expect = 0.95
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 119 aacatgatgggctt 132
||||||||||||||
Sbjct: 447 aacatgatgggctt 434
>CL1078CT1180CN1967 cl1078ct1180cn1967 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcm003cH03f.b,m
Length = 532
Score = 28.2 bits (14), Expect = 0.95
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 48 cgaggagctcaacc 61
||||||||||||||
Sbjct: 296 cgaggagctcaacc 309
>MGNS013BD04F.B mgns013bD04f.b LENGTH:367bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 367
Score = 26.3 bits (13), Expect = 3.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 46 ggcgaggagctca 58
|||||||||||||
Sbjct: 68 ggcgaggagctca 80
>MGCS003AE11F.B mgcs003aE11f.b LENGTH:531bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 531
Score = 26.3 bits (13), Expect = 3.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 10 agccttgcgcatg 22
|||||||||||||
Sbjct: 65 agccttgcgcatg 77
>MGCS002BH08F.B mgcs002bH08f.b LENGTH:433bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 433
Score = 26.3 bits (13), Expect = 3.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 48 cgaggagctcaac 60
|||||||||||||
Sbjct: 417 cgaggagctcaac 405
>MGCM006CG12F.B mgcm006cG12f.b LENGTH:483bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 483
Score = 26.3 bits (13), Expect = 3.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 112 ggatcggaacatg 124
|||||||||||||
Sbjct: 436 ggatcggaacatg 448
>GI14180710 gi14180710 LENGTH:652bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 652
Score = 26.3 bits (13), Expect = 3.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 35 atgaactcgtggg 47
|||||||||||||
Sbjct: 525 atgaactcgtggg 537
>CL807CT898CN1672 cl807ct898cn1672 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:5; ESTS:mgmy002aG09f.b,mgm
Length = 608
Score = 26.3 bits (13), Expect = 3.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 11 gccttgcgcatgt 23
|||||||||||||
Sbjct: 267 gccttgcgcatgt 279
>CL630CT708CN1465 cl630ct708cn1465 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:6; ESTS:gi2537323g,mgns009
Length = 1757
Score = 26.3 bits (13), Expect = 3.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 43 gtgggcgaggagc 55
|||||||||||||
Sbjct: 1145 gtgggcgaggagc 1157
>CL289CT341CN796 cl289ct341cn796 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:8; ESTS:gi14180936,gi253731
Length = 914
Score = 26.3 bits (13), Expect = 3.8
Identities = 16/17 (94%)
Strand = Plus / Minus
Query: 120 acatgatgggctttttt 136
|||||||||||| ||||
Sbjct: 86 acatgatgggctgtttt 70
>CL1043CT1144CN1927 cl1043ct1144cn1927 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:8; ESTS:mgcm002cG02f.b,m
Length = 652
Score = 26.3 bits (13), Expect = 3.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 2 ttgattggagcct 14
|||||||||||||
Sbjct: 3 ttgattggagcct 15
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 175
Number of Sequences: 4717
Number of extensions: 175
Number of successful extensions: 54
Number of sequences better than 10.0: 17
length of query: 136
length of database: 2,543,711
effective HSP length: 14
effective length of query: 122
effective length of database: 2,477,673
effective search space: 302276106
effective search space used: 302276106
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)