BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1606_A03_A06ZS5.seq
(563 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGCS002BE03F.B mgcs002bE03f.b LENGTH:292bp ; DIRECTION:0 ; CLONE... 34 0.069
MGNS010BF12F.B mgns010bF12f.b LENGTH:224bp ; DIRECTION:0 ; CLONE... 32 0.27
GI3392171G gi3392171g LENGTH:791bp ; DIRECTION:0 ; CLONE: n/a ; ... 32 0.27
CL162CT199CN531 cl162ct199cn531 COVERAGE:0.98; CRAWID: 2; TOTAL_... 32 0.27
MGMY003AA11F.B mgmy003aA11f.b LENGTH:159bp ; DIRECTION:0 ; CLONE... 30 1.1
GI14180584 gi14180584 LENGTH:646bp ; DIRECTION:0 ; CLONE: n/a ; ... 30 1.1
CL289CT341CN796 cl289ct341cn796 COVERAGE:0.99; CRAWID: 1; TOTAL_... 30 1.1
CL142CT179CN498 cl142ct179cn498 COVERAGE:0.99; CRAWID: 1; TOTAL_... 30 1.1
MGNS013CD08F.B mgns013cD08f.b LENGTH:468bp ; DIRECTION:0 ; CLONE... 28 4.3
MGNS011CC10F.B mgns011cC10f.b LENGTH:308bp ; DIRECTION:0 ; CLONE... 28 4.3
MGMY001AE11F.B mgmy001aE11f.b LENGTH:584bp ; DIRECTION:0 ; CLONE... 28 4.3
MGCS006DC08F.B mgcs006dC08f.b LENGTH:478bp ; DIRECTION:0 ; CLONE... 28 4.3
MGCS006AB04F.B mgcs006aB04f.b LENGTH:498bp ; DIRECTION:0 ; CLONE... 28 4.3
MGCM008AG05F.B mgcm008aG05f.b LENGTH:386bp ; DIRECTION:0 ; CLONE... 28 4.3
MGCM008AB05F.B mgcm008aB05f.b LENGTH:461bp ; DIRECTION:0 ; CLONE... 28 4.3
GI2537299G gi2537299g LENGTH:583bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 4.3
GI14180850 gi14180850 LENGTH:415bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 4.3
GI14180438 gi14180438 LENGTH:703bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 4.3
CL951CT1050CN1830 cl951ct1050cn1830 COVERAGE:0.98; CRAWID: 1; TO... 28 4.3
CL627CT705CN1460 cl627ct705cn1460 COVERAGE:1.0; CRAWID: 2; TOTAL... 28 4.3
CL574CT648CN1391 cl574ct648cn1391 COVERAGE:0.97; CRAWID: 1; TOTA... 28 4.3
CL460CT531CN1195 cl460ct531cn1195 COVERAGE:0.99; CRAWID: 1; TOTA... 28 4.3
CL156CT193CN521 cl156ct193cn521 COVERAGE:0.99; CRAWID: 1; TOTAL_... 28 4.3
CL1439CT1543CN2339 cl1439ct1543cn2339 COVERAGE:0.97; CRAWID: 1; ... 28 4.3
CL1382CT1485CN2280 cl1382ct1485cn2280 COVERAGE:0.99; CRAWID: 1; ... 28 4.3
CL104CT137CN416 cl104ct137cn416 COVERAGE:0.98; CRAWID: 1; TOTAL_... 28 4.3
CL1003CT1104CN1887 cl1003ct1104cn1887 COVERAGE:0.97; CRAWID: 1; ... 28 4.3
>MGCS002BE03F.B mgcs002bE03f.b LENGTH:292bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 292
Score = 34.2 bits (17), Expect = 0.069
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 434 aacgaccctcgcctggc 450
|||||||||||||||||
Sbjct: 209 aacgaccctcgcctggc 193
>MGNS010BF12F.B mgns010bF12f.b LENGTH:224bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 224
Score = 32.2 bits (16), Expect = 0.27
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 42 gtctcgaggtttgcct 57
||||||||||||||||
Sbjct: 154 gtctcgaggtttgcct 139
>GI3392171G gi3392171g LENGTH:791bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 791
Score = 32.2 bits (16), Expect = 0.27
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 141 agaaggctggccagga 156
||||||||||||||||
Sbjct: 517 agaaggctggccagga 502
>CL162CT199CN531 cl162ct199cn531 COVERAGE:0.98; CRAWID: 2;
TOTAL_ESTS:71; ESTS:gi14181285,gi14180
Length = 1879
Score = 32.2 bits (16), Expect = 0.27
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 287 gtggtcgactttttga 302
||||||||||||||||
Sbjct: 204 gtggtcgactttttga 219
>MGMY003AA11F.B mgmy003aA11f.b LENGTH:159bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 159
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 470 gacctgatcgtcaac 484
|||||||||||||||
Sbjct: 9 gacctgatcgtcaac 23
>GI14180584 gi14180584 LENGTH:646bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 646
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 390 aaatccgccaaaatg 404
|||||||||||||||
Sbjct: 360 aaatccgccaaaatg 374
>CL289CT341CN796 cl289ct341cn796 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:8; ESTS:gi14180936,gi253731
Length = 914
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 217 ccaagctgcggcctt 231
|||||||||||||||
Sbjct: 804 ccaagctgcggcctt 818
>CL142CT179CN498 cl142ct179cn498 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:9; ESTS:gi14181328,gi339196
Length = 791
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 172 cctgccccagcttct 186
|||||||||||||||
Sbjct: 717 cctgccccagcttct 731
>MGNS013CD08F.B mgns013cD08f.b LENGTH:468bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 468
Score = 28.2 bits (14), Expect = 4.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 145 ggctggccaggagc 158
||||||||||||||
Sbjct: 133 ggctggccaggagc 146
>MGNS011CC10F.B mgns011cC10f.b LENGTH:308bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 308
Score = 28.2 bits (14), Expect = 4.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 351 agtggctagagaac 364
||||||||||||||
Sbjct: 162 agtggctagagaac 175
>MGMY001AE11F.B mgmy001aE11f.b LENGTH:584bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 584
Score = 28.2 bits (14), Expect = 4.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 316 caacggcgaaagtg 329
||||||||||||||
Sbjct: 484 caacggcgaaagtg 497
>MGCS006DC08F.B mgcs006dC08f.b LENGTH:478bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 478
Score = 28.2 bits (14), Expect = 4.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 209 gcctctgcccaagc 222
||||||||||||||
Sbjct: 341 gcctctgcccaagc 328
>MGCS006AB04F.B mgcs006aB04f.b LENGTH:498bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 498
Score = 28.2 bits (14), Expect = 4.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 146 gctggccaggagcg 159
||||||||||||||
Sbjct: 397 gctggccaggagcg 384
>MGCM008AG05F.B mgcm008aG05f.b LENGTH:386bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 386
Score = 28.2 bits (14), Expect = 4.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 316 caacggcgaaagtg 329
||||||||||||||
Sbjct: 381 caacggcgaaagtg 368
>MGCM008AB05F.B mgcm008aB05f.b LENGTH:461bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 461
Score = 28.2 bits (14), Expect = 4.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 423 tctactccctcaac 436
||||||||||||||
Sbjct: 128 tctactccctcaac 141
>GI2537299G gi2537299g LENGTH:583bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 583
Score = 28.2 bits (14), Expect = 4.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 340 tgtcgtggccaagt 353
||||||||||||||
Sbjct: 310 tgtcgtggccaagt 323
>GI14180850 gi14180850 LENGTH:415bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 415
Score = 28.2 bits (14), Expect = 4.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 57 tgcacatcatcgac 70
||||||||||||||
Sbjct: 144 tgcacatcatcgac 157
>GI14180438 gi14180438 LENGTH:703bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 703
Score = 28.2 bits (14), Expect = 4.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 109 cgaggttggtggtt 122
||||||||||||||
Sbjct: 278 cgaggttggtggtt 265
>CL951CT1050CN1830 cl951ct1050cn1830 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:12; ESTS:mgcm001aA01f.b,m
Length = 782
Score = 28.2 bits (14), Expect = 4.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 542 accgttgttcccgc 555
||||||||||||||
Sbjct: 213 accgttgttcccgc 200
>CL627CT705CN1460 cl627ct705cn1460 COVERAGE:1.0; CRAWID: 2;
TOTAL_ESTS:1; ESTS:gi3391384g; LENGTH:
Length = 968
Score = 28.2 bits (14), Expect = 4.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 106 ctccgaggttggtg 119
||||||||||||||
Sbjct: 277 ctccgaggttggtg 264
>CL574CT648CN1391 cl574ct648cn1391 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi3391748g,mgap008
Length = 801
Score = 28.2 bits (14), Expect = 4.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 178 ccagcttctccaag 191
||||||||||||||
Sbjct: 73 ccagcttctccaag 60
>CL460CT531CN1195 cl460ct531cn1195 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi3392381g,mgcs005
Length = 920
Score = 28.2 bits (14), Expect = 4.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 118 tggtttggccgctg 131
||||||||||||||
Sbjct: 7 tggtttggccgctg 20
>CL156CT193CN521 cl156ct193cn521 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:7; ESTS:gi14181298,mgap007c
Length = 1241
Score = 28.2 bits (14), Expect = 4.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 18 ggcaagatgccaac 31
||||||||||||||
Sbjct: 24 ggcaagatgccaac 37
>CL1439CT1543CN2339 cl1439ct1543cn2339 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcs006bC02f.b,m
Length = 521
Score = 28.2 bits (14), Expect = 4.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 450 cacaaacacaggtc 463
||||||||||||||
Sbjct: 440 cacaaacacaggtc 427
>CL1382CT1485CN2280 cl1382ct1485cn2280 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:4; ESTS:mgcs002aB04f.b,m
Length = 750
Score = 28.2 bits (14), Expect = 4.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 194 gttgctaacagact 207
||||||||||||||
Sbjct: 661 gttgctaacagact 674
>CL104CT137CN416 cl104ct137cn416 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi14181394,gi339200
Length = 828
Score = 28.2 bits (14), Expect = 4.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 170 ttcctgccccagct 183
||||||||||||||
Sbjct: 564 ttcctgccccagct 577
>CL1003CT1104CN1887 cl1003ct1104cn1887 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:5; ESTS:mgcm001dB01f.b,m
Length = 582
Score = 28.2 bits (14), Expect = 4.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 141 agaaggctggccag 154
||||||||||||||
Sbjct: 314 agaaggctggccag 327
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 884
Number of Sequences: 4717
Number of extensions: 884
Number of successful extensions: 247
Number of sequences better than 10.0: 27
length of query: 563
length of database: 2,543,711
effective HSP length: 15
effective length of query: 548
effective length of database: 2,472,956
effective search space: 1355179888
effective search space used: 1355179888
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)