BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1606_C07_E14ZS5.seq
(469 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGNS009CE08F.B mgns009cE08f.b LENGTH:424bp ; DIRECTION:0 ; CLONE... 30 0.89
MGNS011BH01F.B mgns011bH01f.b LENGTH:379bp ; DIRECTION:0 ; CLONE... 28 3.5
MGCM002CH02F.B mgcm002cH02f.b LENGTH:429bp ; DIRECTION:0 ; CLONE... 28 3.5
MGCM001BC08F.B mgcm001bC08f.b LENGTH:407bp ; DIRECTION:0 ; CLONE... 28 3.5
GI3391743G gi3391743g LENGTH:773bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 3.5
GI3391420G gi3391420g LENGTH:903bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 3.5
GI3391399G gi3391399g LENGTH:958bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 3.5
GI14181195 gi14181195 LENGTH:700bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 3.5
CL755CT844CN1617 cl755ct844cn1617 COVERAGE:0.98; CRAWID: 1; TOTA... 28 3.5
CL735CT821CN1594 cl735ct821cn1594 COVERAGE:0.99; CRAWID: 1; TOTA... 28 3.5
CL527CT601CN1321 cl527ct601cn1321 COVERAGE:0.99; CRAWID: 1; TOTA... 28 3.5
CL229CT272CN672 cl229ct272cn672 COVERAGE:0.98; CRAWID: 1; TOTAL_... 28 3.5
>MGNS009CE08F.B mgns009cE08f.b LENGTH:424bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 424
Score = 30.2 bits (15), Expect = 0.89
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 163 tcatggagcagttca 177
|||||||||||||||
Sbjct: 377 tcatggagcagttca 363
>MGNS011BH01F.B mgns011bH01f.b LENGTH:379bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 379
Score = 28.2 bits (14), Expect = 3.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 385 attttgggccgggg 398
||||||||||||||
Sbjct: 179 attttgggccgggg 166
>MGCM002CH02F.B mgcm002cH02f.b LENGTH:429bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 429
Score = 28.2 bits (14), Expect = 3.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 357 acagagttgactcg 370
||||||||||||||
Sbjct: 2 acagagttgactcg 15
>MGCM001BC08F.B mgcm001bC08f.b LENGTH:407bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 407
Score = 28.2 bits (14), Expect = 3.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 221 gctgcgtttggagg 234
||||||||||||||
Sbjct: 258 gctgcgtttggagg 245
>GI3391743G gi3391743g LENGTH:773bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 773
Score = 28.2 bits (14), Expect = 3.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 385 attttgggccgggg 398
||||||||||||||
Sbjct: 275 attttgggccgggg 262
>GI3391420G gi3391420g LENGTH:903bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 903
Score = 28.2 bits (14), Expect = 3.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 230 ggaggaggatgaagccaa 247
|||| |||||||||||||
Sbjct: 185 ggagcaggatgaagccaa 168
>GI3391399G gi3391399g LENGTH:958bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 958
Score = 28.2 bits (14), Expect = 3.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 410 atcttctggtgaag 423
||||||||||||||
Sbjct: 290 atcttctggtgaag 277
>GI14181195 gi14181195 LENGTH:700bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 700
Score = 28.2 bits (14), Expect = 3.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 329 cgtgtgtgagctac 342
||||||||||||||
Sbjct: 439 cgtgtgtgagctac 426
>CL755CT844CN1617 cl755ct844cn1617 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgmy001cA05f.b,mgm
Length = 547
Score = 28.2 bits (14), Expect = 3.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 189 gtgcgccaaaactg 202
||||||||||||||
Sbjct: 84 gtgcgccaaaactg 97
>CL735CT821CN1594 cl735ct821cn1594 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:9; ESTS:mgmy001bA09f.b,mgm
Length = 1123
Score = 28.2 bits (14), Expect = 3.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 275 ttgcgcctcaacgg 288
||||||||||||||
Sbjct: 480 ttgcgcctcaacgg 493
Score = 28.2 bits (14), Expect = 3.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 4 gaagagatgaagag 17
||||||||||||||
Sbjct: 228 gaagagatgaagag 215
>CL527CT601CN1321 cl527ct601cn1321 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi3392004g,mgcs002
Length = 865
Score = 28.2 bits (14), Expect = 3.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 308 agatatatcgagaatatg 325
||||||||||| ||||||
Sbjct: 596 agatatatcgacaatatg 579
>CL229CT272CN672 cl229ct272cn672 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi14181099,gi339138
Length = 878
Score = 28.2 bits (14), Expect = 3.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 230 ggaggaggatgaag 243
||||||||||||||
Sbjct: 410 ggaggaggatgaag 423
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 564
Number of Sequences: 4717
Number of extensions: 564
Number of successful extensions: 149
Number of sequences better than 10.0: 12
length of query: 469
length of database: 2,543,711
effective HSP length: 15
effective length of query: 454
effective length of database: 2,472,956
effective search space: 1122722024
effective search space used: 1122722024
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)