BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1606_E02_I04ZS5.seq
(395 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CL940CT1039CN1819 cl940ct1039cn1819 COVERAGE:1.0; CRAWID: 1; TOT... 36 0.012
CL630CT708CN1465 cl630ct708cn1465 COVERAGE:0.98; CRAWID: 1; TOTA... 30 0.75
MGMY006DD08F.B mgmy006dD08f.b LENGTH:522bp ; DIRECTION:0 ; CLONE... 28 3.0
MGMY002BH05F.B mgmy002bH05f.b LENGTH:79bp ; DIRECTION:0 ; CLONE:... 28 3.0
GI14180871 gi14180871 LENGTH:675bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 3.0
GI14180464 gi14180464 LENGTH:732bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 3.0
CL955CT1054CN1834 cl955ct1054cn1834 COVERAGE:1.0; CRAWID: 1; TOT... 28 3.0
CL795CT884CN1658 cl795ct884cn1658 COVERAGE:1.0; CRAWID: 1; TOTAL... 28 3.0
CL40CT56CN169 cl40ct56cn169 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS... 28 3.0
CL11CT16CN51 cl11ct16cn51 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:4... 28 3.0
>CL940CT1039CN1819 cl940ct1039cn1819 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgmy006bG10f.b,mgm
Length = 532
Score = 36.2 bits (18), Expect = 0.012
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 114 gcatatgcaaatgcaagg 131
||||||||||||||||||
Sbjct: 137 gcatatgcaaatgcaagg 154
>CL630CT708CN1465 cl630ct708cn1465 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:6; ESTS:gi2537323g,mgns009
Length = 1757
Score = 30.2 bits (15), Expect = 0.75
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 330 cgaacagctcaaggt 344
|||||||||||||||
Sbjct: 1397 cgaacagctcaaggt 1383
>MGMY006DD08F.B mgmy006dD08f.b LENGTH:522bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 522
Score = 28.2 bits (14), Expect = 3.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 184 caaggaggaataag 197
||||||||||||||
Sbjct: 236 caaggaggaataag 223
>MGMY002BH05F.B mgmy002bH05f.b LENGTH:79bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:[
Length = 79
Score = 28.2 bits (14), Expect = 3.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 5 cacgagcccaggga 18
||||||||||||||
Sbjct: 33 cacgagcccaggga 46
>GI14180871 gi14180871 LENGTH:675bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 675
Score = 28.2 bits (14), Expect = 3.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 74 aaggacgaacccaa 87
||||||||||||||
Sbjct: 155 aaggacgaacccaa 142
>GI14180464 gi14180464 LENGTH:732bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 732
Score = 28.2 bits (14), Expect = 3.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 211 acatttggagtatggact 228
|||||||||||| |||||
Sbjct: 144 acatttggagtaaggact 127
>CL955CT1054CN1834 cl955ct1054cn1834 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:1; ESTS:mgcm008dH04f.b; LE
Length = 412
Score = 28.2 bits (14), Expect = 3.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 98 aagaaggagtgcaggtgc 115
|||||||||||| |||||
Sbjct: 328 aagaaggagtgcgggtgc 311
>CL795CT884CN1658 cl795ct884cn1658 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgmy002aA12f.b,mgcs
Length = 362
Score = 28.2 bits (14), Expect = 3.0
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 49 caaggacaacctcaagga 66
||||| ||||||||||||
Sbjct: 167 caaggccaacctcaagga 184
>CL40CT56CN169 cl40ct56cn169 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:24; ESTS:gi14180935,mgcm004dC
Length = 1076
Score = 28.2 bits (14), Expect = 3.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 56 aacctcaaggacga 69
||||||||||||||
Sbjct: 328 aacctcaaggacga 315
>CL11CT16CN51 cl11ct16cn51 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:44;
ESTS:gi14181577,gi14181405
Length = 1188
Score = 28.2 bits (14), Expect = 3.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 202 tcatctcaaacatt 215
||||||||||||||
Sbjct: 244 tcatctcaaacatt 257
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 480
Number of Sequences: 4717
Number of extensions: 480
Number of successful extensions: 128
Number of sequences better than 10.0: 10
length of query: 395
length of database: 2,543,711
effective HSP length: 15
effective length of query: 380
effective length of database: 2,472,956
effective search space: 939723280
effective search space used: 939723280
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)