BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1606_F04_K08ZS5.seq
(453 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CL317CT371CN848 cl317ct371cn848 COVERAGE:0.98; CRAWID: 1; TOTAL_... 30 0.86
MGNS010BH11F.B mgns010bH11f.b LENGTH:412bp ; DIRECTION:0 ; CLONE... 28 3.4
MGCM008AE11F.B mgcm008aE11f.b LENGTH:336bp ; DIRECTION:0 ; CLONE... 28 3.4
GI3391632G gi3391632g LENGTH:808bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 3.4
GI2537312G gi2537312g LENGTH:1168bp ; DIRECTION:0 ; CLONE: n/a ;... 28 3.4
GI14180701 gi14180701 LENGTH:310bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 3.4
CL1CT2CN2 cl1ct2cn2 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:6; ESTS... 28 3.4
>CL317CT371CN848 cl317ct371cn848 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:3; ESTS:gi14180831,gi339148
Length = 1121
Score = 30.2 bits (15), Expect = 0.86
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 135 accgcaagattgacc 149
|||||||||||||||
Sbjct: 514 accgcaagattgacc 528
>MGNS010BH11F.B mgns010bH11f.b LENGTH:412bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 412
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 218 gcgagtaccgccgc 231
||||||||||||||
Sbjct: 349 gcgagtaccgccgc 362
>MGCM008AE11F.B mgcm008aE11f.b LENGTH:336bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 336
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 74 gagcagcgtgagga 87
||||||||||||||
Sbjct: 274 gagcagcgtgagga 261
>GI3391632G gi3391632g LENGTH:808bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 808
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 336 gtcaagagtgggtc 349
||||||||||||||
Sbjct: 485 gtcaagagtgggtc 472
>GI2537312G gi2537312g LENGTH:1168bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 1168
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 162 ctgttctggtgatg 175
||||||||||||||
Sbjct: 79 ctgttctggtgatg 66
>GI14180701 gi14180701 LENGTH:310bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 310
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 354 aacagaggggcggg 367
||||||||||||||
Sbjct: 107 aacagaggggcggg 120
>CL1CT2CN2 cl1ct2cn2 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:6;
ESTS:gi3391408g,mgcm005bG01f.b
Length = 1098
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 329 ggtcgaggtcaaga 342
||||||||||||||
Sbjct: 387 ggtcgaggtcaaga 400
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 559
Number of Sequences: 4717
Number of extensions: 559
Number of successful extensions: 156
Number of sequences better than 10.0: 7
length of query: 453
length of database: 2,543,711
effective HSP length: 15
effective length of query: 438
effective length of database: 2,472,956
effective search space: 1083154728
effective search space used: 1083154728
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)