BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1606_F11_K22ZS5.seq
(457 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGCS010AE09F.B mgcs010aE09f.b LENGTH:434bp ; DIRECTION:0 ; CLONE... 28 3.4
MGCS004CE07F.B mgcs004cE07f.b LENGTH:430bp ; DIRECTION:0 ; CLONE... 28 3.4
GI3392296G gi3392296g LENGTH:823bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 3.4
CL943CT1042CN1822 cl943ct1042cn1822 COVERAGE:0.99; CRAWID: 1; TO... 28 3.4
CL591CT666CN1415 cl591ct666cn1415 COVERAGE:0.98; CRAWID: 1; TOTA... 28 3.4
CL480CT553CN1233 cl480ct553cn1233 COVERAGE:0.99; CRAWID: 1; TOTA... 28 3.4
CL176CT213CN555 cl176ct213cn555 COVERAGE:0.99; CRAWID: 1; TOTAL_... 28 3.4
CL1326CT1429CN2221 cl1326ct1429cn2221 COVERAGE:0.99; CRAWID: 1; ... 28 3.4
CL1136CT1239CN2028 cl1136ct1239cn2028 COVERAGE:0.99; CRAWID: 1; ... 28 3.4
>MGCS010AE09F.B mgcs010aE09f.b LENGTH:434bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 434
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 111 gccaaccccatcaa 124
||||||||||||||
Sbjct: 139 gccaaccccatcaa 152
>MGCS004CE07F.B mgcs004cE07f.b LENGTH:430bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 430
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 413 gatgagatccgacg 426
||||||||||||||
Sbjct: 332 gatgagatccgacg 345
>GI3392296G gi3392296g LENGTH:823bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 823
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 294 ccgtgttgccactc 307
||||||||||||||
Sbjct: 587 ccgtgttgccactc 600
>CL943CT1042CN1822 cl943ct1042cn1822 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgmy006cG08f.b,mg
Length = 452
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 424 acgggtttggtaaa 437
||||||||||||||
Sbjct: 256 acgggtttggtaaa 243
>CL591CT666CN1415 cl591ct666cn1415 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:4; ESTS:gi3391663g,mgns011
Length = 932
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 28 gagccttggcgatt 41
||||||||||||||
Sbjct: 274 gagccttggcgatt 261
>CL480CT553CN1233 cl480ct553cn1233 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:6; ESTS:gi2537287g,gi25372
Length = 1531
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 42 ctcgcggccaggcc 55
||||||||||||||
Sbjct: 255 ctcgcggccaggcc 268
>CL176CT213CN555 cl176ct213cn555 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:7; ESTS:gi14181248,mgmy003b
Length = 679
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 317 cttcttgaggccac 330
||||||||||||||
Sbjct: 401 cttcttgaggccac 388
>CL1326CT1429CN2221 cl1326ct1429cn2221 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns007aE10f.b,m
Length = 408
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 214 tatggttgaagaag 227
||||||||||||||
Sbjct: 361 tatggttgaagaag 348
>CL1136CT1239CN2028 cl1136ct1239cn2028 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:8; ESTS:mgcm005aE12f.b,m
Length = 560
Score = 28.2 bits (14), Expect = 3.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 170 ttgagtgatgagat 183
||||||||||||||
Sbjct: 123 ttgagtgatgagat 110
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 501
Number of Sequences: 4717
Number of extensions: 501
Number of successful extensions: 133
Number of sequences better than 10.0: 9
length of query: 457
length of database: 2,543,711
effective HSP length: 15
effective length of query: 442
effective length of database: 2,472,956
effective search space: 1093046552
effective search space used: 1093046552
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)