BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1606_G01_M02ZS5.seq
(463 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGCS002AB09F.B mgcs002aB09f.b LENGTH:283bp ; DIRECTION:0 ; CLONE... 32 0.22
MGNS011CH10F.B mgns011cH10f.b LENGTH:383bp ; DIRECTION:0 ; CLONE... 30 0.88
MGNS011BB01F.B mgns011bB01f.b LENGTH:396bp ; DIRECTION:0 ; CLONE... 30 0.88
CL849CT945CN1720 cl849ct945cn1720 COVERAGE:0.99; CRAWID: 1; TOTA... 30 0.88
CL36CT42CN145 cl36ct42cn145 COVERAGE:0.99; CRAWID: 2; TOTAL_ESTS... 30 0.88
CL1136CT1239CN2028 cl1136ct1239cn2028 COVERAGE:0.99; CRAWID: 1; ... 30 0.88
MGCS011AA09F.B mgcs011aA09f.b LENGTH:441bp ; DIRECTION:0 ; CLONE... 28 3.5
MGCS003BG05F.B mgcs003bG05f.b LENGTH:392bp ; DIRECTION:0 ; CLONE... 28 3.5
MGCS002BD11F.B mgcs002bD11f.b LENGTH:461bp ; DIRECTION:0 ; CLONE... 28 3.5
GI14181591 gi14181591 LENGTH:637bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 3.5
GI14181195 gi14181195 LENGTH:700bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 3.5
CL85CT118CN386 cl85ct118cn386 COVERAGE:0.97; CRAWID: 1; TOTAL_ES... 28 3.5
CL841CT937CN1712 cl841ct937cn1712 COVERAGE:0.99; CRAWID: 1; TOTA... 28 3.5
CL724CT809CN1580 cl724ct809cn1580 COVERAGE:0.99; CRAWID: 1; TOTA... 28 3.5
CL40CT56CN169 cl40ct56cn169 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS... 28 3.5
CL144CT181CN501 cl144ct181cn501 COVERAGE:0.97; CRAWID: 1; TOTAL_... 28 3.5
CL1313CT1416CN2208 cl1313ct1416cn2208 COVERAGE:0.96; CRAWID: 1; ... 28 3.5
>MGCS002AB09F.B mgcs002aB09f.b LENGTH:283bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 283
Score = 32.2 bits (16), Expect = 0.22
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 90 cgaggccaacaagctcgcgc 109
||||||||||||||| ||||
Sbjct: 142 cgaggccaacaagctggcgc 161
>MGNS011CH10F.B mgns011cH10f.b LENGTH:383bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 383
Score = 30.2 bits (15), Expect = 0.88
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 15 gcgcaaagctttctaccgt 33
|||||| ||||||||||||
Sbjct: 196 gcgcaaggctttctaccgt 214
>MGNS011BB01F.B mgns011bB01f.b LENGTH:396bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 396
Score = 30.2 bits (15), Expect = 0.88
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 357 atcttttattataacatga 375
||||||| |||||||||||
Sbjct: 103 atcttttgttataacatga 121
>CL849CT945CN1720 cl849ct945cn1720 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgmy003aG10f.b,mgm
Length = 467
Score = 30.2 bits (15), Expect = 0.88
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 133 gagctcaacggcgtc 147
|||||||||||||||
Sbjct: 9 gagctcaacggcgtc 23
>CL36CT42CN145 cl36ct42cn145 COVERAGE:0.99; CRAWID: 2;
TOTAL_ESTS:14; ESTS:gi14181526,gi1418101
Length = 956
Score = 30.2 bits (15), Expect = 0.88
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 178 gagaaggctgcttac 192
|||||||||||||||
Sbjct: 376 gagaaggctgcttac 390
>CL1136CT1239CN2028 cl1136ct1239cn2028 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:8; ESTS:mgcm005aE12f.b,m
Length = 560
Score = 30.2 bits (15), Expect = 0.88
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 76 gtgcgcgacctgaccgagg 94
||||||||||||| |||||
Sbjct: 533 gtgcgcgacctgatcgagg 551
>MGCS011AA09F.B mgcs011aA09f.b LENGTH:441bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 441
Score = 28.2 bits (14), Expect = 3.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 225 gaaggcatcacagg 238
||||||||||||||
Sbjct: 336 gaaggcatcacagg 349
>MGCS003BG05F.B mgcs003bG05f.b LENGTH:392bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 392
Score = 28.2 bits (14), Expect = 3.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 244 tagaaggcgtccgt 257
||||||||||||||
Sbjct: 55 tagaaggcgtccgt 42
>MGCS002BD11F.B mgcs002bD11f.b LENGTH:461bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 461
Score = 28.2 bits (14), Expect = 3.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 355 ccatcttttattat 368
||||||||||||||
Sbjct: 294 ccatcttttattat 307
>GI14181591 gi14181591 LENGTH:637bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 637
Score = 28.2 bits (14), Expect = 3.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 172 gccaaggagaaggc 185
||||||||||||||
Sbjct: 247 gccaaggagaaggc 260
>GI14181195 gi14181195 LENGTH:700bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 700
Score = 28.2 bits (14), Expect = 3.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 162 tgctcgcgctgcca 175
||||||||||||||
Sbjct: 654 tgctcgcgctgcca 641
>CL85CT118CN386 cl85ct118cn386 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi14181428,gi3391468
Length = 930
Score = 28.2 bits (14), Expect = 3.5
Identities = 20/22 (90%)
Strand = Plus / Plus
Query: 42 tgccaacatccacctcaaggac 63
||||| |||| |||||||||||
Sbjct: 201 tgccatcatcaacctcaaggac 222
>CL841CT937CN1712 cl841ct937cn1712 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgmy003aB12f.b,mgm
Length = 469
Score = 28.2 bits (14), Expect = 3.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 192 caagaaattcttca 205
||||||||||||||
Sbjct: 190 caagaaattcttca 203
>CL724CT809CN1580 cl724ct809cn1580 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:6; ESTS:mgmy001aB05f.b,mgm
Length = 983
Score = 28.2 bits (14), Expect = 3.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 148 aagaccaaggctgc 161
||||||||||||||
Sbjct: 488 aagaccaaggctgc 501
>CL40CT56CN169 cl40ct56cn169 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:24; ESTS:gi14180935,mgcm004dC
Length = 1076
Score = 28.2 bits (14), Expect = 3.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 53 acctcaaggacgag 66
||||||||||||||
Sbjct: 327 acctcaaggacgag 314
>CL144CT181CN501 cl144ct181cn501 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:11; ESTS:gi14181323,gi33922
Length = 916
Score = 28.2 bits (14), Expect = 3.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 94 gccaacaagctcgcgccc 111
||||||||||| ||||||
Sbjct: 655 gccaacaagcttgcgccc 638
>CL1313CT1416CN2208 cl1313ct1416cn2208 COVERAGE:0.96; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns002dD01f.b,m
Length = 517
Score = 28.2 bits (14), Expect = 3.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 156 ggctgctgctcgcg 169
||||||||||||||
Sbjct: 218 ggctgctgctcgcg 205
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 742
Number of Sequences: 4717
Number of extensions: 742
Number of successful extensions: 236
Number of sequences better than 10.0: 17
length of query: 463
length of database: 2,543,711
effective HSP length: 15
effective length of query: 448
effective length of database: 2,472,956
effective search space: 1107884288
effective search space used: 1107884288
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)