BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1606_H04_O08ZS5.seq
(575 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGCS004BB01F.B mgcs004bB01f.b LENGTH:479bp ; DIRECTION:0 ; CLONE... 36 0.018
MGCS011AE08F.B mgcs011aE08f.b LENGTH:527bp ; DIRECTION:0 ; CLONE... 34 0.071
MGAP008CD05F.B mgap008cD05f.b LENGTH:328bp ; DIRECTION:0 ; CLONE... 34 0.071
CL352CT414CN903 cl352ct414cn903 COVERAGE:0.99; CRAWID: 1; TOTAL_... 34 0.071
CL352CT413CN902 cl352ct413cn902 COVERAGE:0.99; CRAWID: 1; TOTAL_... 34 0.071
MGMY002DF11F.B mgmy002dF11f.b LENGTH:309bp ; DIRECTION:0 ; CLONE... 32 0.28
CL648CT729CN1495 cl648ct729cn1495 COVERAGE:0.98; CRAWID: 1; TOTA... 32 0.28
CL1224CT1327CN2117 cl1224ct1327cn2117 COVERAGE:1.0; CRAWID: 1; T... 32 0.28
MGCS010DE03F.B mgcs010dE03f.b LENGTH:220bp ; DIRECTION:0 ; CLONE... 30 1.1
MGCS005AF01F.B mgcs005aF01f.b LENGTH:423bp ; DIRECTION:0 ; CLONE... 30 1.1
GI14181481 gi14181481 LENGTH:646bp ; DIRECTION:0 ; CLONE: n/a ; ... 30 1.1
CL758CT847CN1620 cl758ct847cn1620 COVERAGE:0.97; CRAWID: 1; TOTA... 30 1.1
CL68CT97CN336 cl68ct97cn336 COVERAGE:1.0; CRAWID: 3; TOTAL_ESTS:... 30 1.1
CL595CT670CN1419 cl595ct670cn1419 COVERAGE:1.0; CRAWID: 1; TOTAL... 30 1.1
CL466CT538CN1205 cl466ct538cn1205 COVERAGE:0.95; CRAWID: 1; TOTA... 30 1.1
CL205CT245CN629 cl205ct245cn629 COVERAGE:0.98; CRAWID: 1; TOTAL_... 30 1.1
CL1079CT1181CN1968 cl1079ct1181cn1968 COVERAGE:0.99; CRAWID: 1; ... 30 1.1
CL1014CT1115CN1898 cl1014ct1115cn1898 COVERAGE:0.99; CRAWID: 1; ... 30 1.1
MGNS011AD12F.B mgns011aD12f.b LENGTH:370bp ; DIRECTION:0 ; CLONE... 28 4.4
MGCS010BE07F.B mgcs010bE07f.b LENGTH:287bp ; DIRECTION:0 ; CLONE... 28 4.4
MGCS009DG04F.B mgcs009dG04f.b LENGTH:265bp ; DIRECTION:0 ; CLONE... 28 4.4
MGCS009AA06F.B mgcs009aA06f.b LENGTH:522bp ; DIRECTION:0 ; CLONE... 28 4.4
MGCM003BC06F.B mgcm003bC06f.b LENGTH:341bp ; DIRECTION:0 ; CLONE... 28 4.4
MGCM002BC11F.B mgcm002bC11f.b LENGTH:373bp ; DIRECTION:0 ; CLONE... 28 4.4
GI3392037G gi3392037g LENGTH:859bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 4.4
GI3391506G gi3391506g LENGTH:974bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 4.4
GI14181093 gi14181093 LENGTH:979bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 4.4
CL721CT806CN1577 cl721ct806cn1577 COVERAGE:0.99; CRAWID: 1; TOTA... 28 4.4
CL655CT737CN1504 cl655ct737cn1504 COVERAGE:0.99; CRAWID: 1; TOTA... 28 4.4
CL645CT725CN1491 cl645ct725cn1491 COVERAGE:0.98; CRAWID: 1; TOTA... 28 4.4
CL633CT711CN1475 cl633ct711cn1475 COVERAGE:0.99; CRAWID: 1; TOTA... 28 4.4
CL549CT623CN1353 cl549ct623cn1353 COVERAGE:1.0; CRAWID: 1; TOTAL... 28 4.4
CL493CT567CN1260 cl493ct567cn1260 COVERAGE:0.98; CRAWID: 1; TOTA... 28 4.4
CL42CT65CN240 cl42ct65cn240 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS... 28 4.4
CL31CT37CN129 cl31ct37cn129 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS... 28 4.4
CL156CT193CN521 cl156ct193cn521 COVERAGE:0.99; CRAWID: 1; TOTAL_... 28 4.4
CL146CT183CN504 cl146ct183cn504 COVERAGE:0.99; CRAWID: 1; TOTAL_... 28 4.4
CL1103CT1206CN1993 cl1103ct1206cn1993 COVERAGE:0.99; CRAWID: 1; ... 28 4.4
CL1009CT1110CN1893 cl1009ct1110cn1893 COVERAGE:0.98; CRAWID: 1; ... 28 4.4
>MGCS004BB01F.B mgcs004bB01f.b LENGTH:479bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 479
Score = 36.2 bits (18), Expect = 0.018
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 180 aggccgccaaggacttca 197
||||||||||||||||||
Sbjct: 166 aggccgccaaggacttca 183
>MGCS011AE08F.B mgcs011aE08f.b LENGTH:527bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 527
Score = 34.2 bits (17), Expect = 0.071
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 27 agaagaagctcgccgag 43
|||||||||||||||||
Sbjct: 278 agaagaagctcgccgag 294
>MGAP008CD05F.B mgap008cD05f.b LENGTH:328bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 328
Score = 34.2 bits (17), Expect = 0.071
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 175 tgaggaggccgccaagg 191
|||||||||||||||||
Sbjct: 202 tgaggaggccgccaagg 218
>CL352CT414CN903 cl352ct414cn903 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:17; ESTS:gi14180709,gi33921
Length = 876
Score = 34.2 bits (17), Expect = 0.071
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 27 agaagaagctcgccgag 43
|||||||||||||||||
Sbjct: 297 agaagaagctcgccgag 313
>CL352CT413CN902 cl352ct413cn902 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgmy006dG07f.b,mgcm
Length = 499
Score = 34.2 bits (17), Expect = 0.071
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 27 agaagaagctcgccgag 43
|||||||||||||||||
Sbjct: 235 agaagaagctcgccgag 251
>MGMY002DF11F.B mgmy002dF11f.b LENGTH:309bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 309
Score = 32.2 bits (16), Expect = 0.28
Identities = 22/24 (91%)
Strand = Plus / Minus
Query: 176 gaggaggccgccaaggacttcaag 199
||||| |||| |||||||||||||
Sbjct: 76 gaggatgccggcaaggacttcaag 53
>CL648CT729CN1495 cl648ct729cn1495 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:20; ESTS:gi2537266g,mgmy00
Length = 1058
Score = 32.2 bits (16), Expect = 0.28
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 432 atccgtatgggcgcctctgc 451
|||||||||||| |||||||
Sbjct: 345 atccgtatgggctcctctgc 326
>CL1224CT1327CN2117 cl1224ct1327cn2117 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcm009dF03f.b,mg
Length = 349
Score = 32.2 bits (16), Expect = 0.28
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 177 aggaggccgccaagga 192
||||||||||||||||
Sbjct: 85 aggaggccgccaagga 100
>MGCS010DE03F.B mgcs010dE03f.b LENGTH:220bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 220
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 176 gaggaggccgccaag 190
|||||||||||||||
Sbjct: 62 gaggaggccgccaag 76
>MGCS005AF01F.B mgcs005aF01f.b LENGTH:423bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 423
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 136 tgcgcgcaagaagga 150
|||||||||||||||
Sbjct: 161 tgcgcgcaagaagga 175
>GI14181481 gi14181481 LENGTH:646bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 646
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 432 atccgtatgggcgcc 446
|||||||||||||||
Sbjct: 465 atccgtatgggcgcc 451
>CL758CT847CN1620 cl758ct847cn1620 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:9; ESTS:mgmy002cE09f.b,mgm
Length = 736
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 48 ccaaggataaggcca 62
|||||||||||||||
Sbjct: 161 ccaaggataaggcca 175
>CL68CT97CN336 cl68ct97cn336 COVERAGE:1.0; CRAWID: 3; TOTAL_ESTS:1;
ESTS:gi3392232g; LENGTH:894
Length = 894
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 68 caaaaggccctcaag 82
|||||||||||||||
Sbjct: 480 caaaaggccctcaag 494
>CL595CT670CN1419 cl595ct670cn1419 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:1; ESTS:mgap007cH07f.b; LEN
Length = 480
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 176 gaggaggccgccaag 190
|||||||||||||||
Sbjct: 143 gaggaggccgccaag 157
>CL466CT538CN1205 cl466ct538cn1205 COVERAGE:0.95; CRAWID: 1;
TOTAL_ESTS:3; ESTS:gi3392365g,mgns001
Length = 893
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 183 ccgccaaggacttca 197
|||||||||||||||
Sbjct: 620 ccgccaaggacttca 634
>CL205CT245CN629 cl205ct245cn629 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:4; ESTS:gi14181165,mgcm003b
Length = 730
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 176 gaggaggccgccaag 190
|||||||||||||||
Sbjct: 495 gaggaggccgccaag 509
>CL1079CT1181CN1968 cl1079ct1181cn1968 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgcm003cH08f.b,m
Length = 435
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 142 caagaaggactacga 156
|||||||||||||||
Sbjct: 331 caagaaggactacga 345
>CL1014CT1115CN1898 cl1014ct1115cn1898 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcm002aA10f.b,m
Length = 517
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 56 aaggccaagtaccaa 70
|||||||||||||||
Sbjct: 312 aaggccaagtaccaa 326
>MGNS011AD12F.B mgns011aD12f.b LENGTH:370bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 370
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 391 caaccgcaagttca 404
||||||||||||||
Sbjct: 4 caaccgcaagttca 17
>MGCS010BE07F.B mgcs010bE07f.b LENGTH:287bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 287
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 170 gctattgaggaggc 183
||||||||||||||
Sbjct: 23 gctattgaggaggc 36
>MGCS009DG04F.B mgcs009dG04f.b LENGTH:265bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 265
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 180 aggccgccaaggac 193
||||||||||||||
Sbjct: 136 aggccgccaaggac 149
>MGCS009AA06F.B mgcs009aA06f.b LENGTH:522bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 522
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 179 gaggccgccaagga 192
||||||||||||||
Sbjct: 185 gaggccgccaagga 198
>MGCM003BC06F.B mgcm003bC06f.b LENGTH:341bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 341
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 534 tgtgctttgtagtt 547
||||||||||||||
Sbjct: 104 tgtgctttgtagtt 91
>MGCM002BC11F.B mgcm002bC11f.b LENGTH:373bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 373
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 158 gttgtcaagaaggc 171
||||||||||||||
Sbjct: 187 gttgtcaagaaggc 200
>GI3392037G gi3392037g LENGTH:859bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 859
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 306 tcgacaacaccttc 319
||||||||||||||
Sbjct: 16 tcgacaacaccttc 29
>GI3391506G gi3391506g LENGTH:974bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 974
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 174 ttgaggaggccgcc 187
||||||||||||||
Sbjct: 235 ttgaggaggccgcc 248
>GI14181093 gi14181093 LENGTH:979bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 979
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 50 aaggataaggccaa 63
||||||||||||||
Sbjct: 235 aaggataaggccaa 248
>CL721CT806CN1577 cl721ct806cn1577 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:7; ESTS:mgmy001aA05f.b,mgm
Length = 603
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 351 ctgcgcctgcggtg 364
||||||||||||||
Sbjct: 352 ctgcgcctgcggtg 365
>CL655CT737CN1504 cl655ct737cn1504 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:4; ESTS:gi2537249g,mgap008
Length = 2004
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 180 aggccgccaaggac 193
||||||||||||||
Sbjct: 821 aggccgccaaggac 834
>CL645CT725CN1491 cl645ct725cn1491 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:23; ESTS:gi2537280g,mgmy00
Length = 769
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 386 aaccccaaccgcaa 399
||||||||||||||
Sbjct: 115 aaccccaaccgcaa 128
>CL633CT711CN1475 cl633ct711cn1475 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:13; ESTS:gi2537308g,mgmy00
Length = 1575
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 70 aaaggccctcaagg 83
||||||||||||||
Sbjct: 1030 aaaggccctcaagg 1043
>CL549CT623CN1353 cl549ct623cn1353 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:4; ESTS:gi3391894g,mgap010c
Length = 989
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 141 gcaagaaggactac 154
||||||||||||||
Sbjct: 675 gcaagaaggactac 688
>CL493CT567CN1260 cl493ct567cn1260 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:16; ESTS:gi2537304g,mgap00
Length = 1497
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 158 gttgtcaagaaggc 171
||||||||||||||
Sbjct: 273 gttgtcaagaaggc 286
>CL42CT65CN240 cl42ct65cn240 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:13; ESTS:gi14181515,gi1418073
Length = 1585
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 358 tgcggtgcgcgagg 371
||||||||||||||
Sbjct: 496 tgcggtgcgcgagg 483
>CL31CT37CN129 cl31ct37cn129 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:5;
ESTS:gi14181534,gi14181364
Length = 950
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 95 gagggtttctttgc 108
||||||||||||||
Sbjct: 621 gagggtttctttgc 634
>CL156CT193CN521 cl156ct193cn521 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:7; ESTS:gi14181298,mgap007c
Length = 1241
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 179 gaggccgccaagga 192
||||||||||||||
Sbjct: 260 gaggccgccaagga 273
>CL146CT183CN504 cl146ct183cn504 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi14181319,gi339228
Length = 973
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 15 tcgaggaggctcag 28
||||||||||||||
Sbjct: 558 tcgaggaggctcag 571
>CL1103CT1206CN1993 cl1103ct1206cn1993 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgcm004bB05f.b,m
Length = 592
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 25 tcagaagaagctcg 38
||||||||||||||
Sbjct: 410 tcagaagaagctcg 423
>CL1009CT1110CN1893 cl1009ct1110cn1893 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcm001dE08f.b,m
Length = 581
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 553 gccgtgtatcgcgt 566
||||||||||||||
Sbjct: 88 gccgtgtatcgcgt 75
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 898
Number of Sequences: 4717
Number of extensions: 898
Number of successful extensions: 306
Number of sequences better than 10.0: 39
length of query: 575
length of database: 2,543,711
effective HSP length: 15
effective length of query: 560
effective length of database: 2,472,956
effective search space: 1384855360
effective search space used: 1384855360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)