BLASTN 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1607_A05_B09ZS5.seq
         (357 letters)

Database: /phillip/Ncr/Mgr_IFAFSGB_nr
           4717 sequences; 2,543,711 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CL4CT6CN15 cl4ct6cn15 COVERAGE:0.97; CRAWID: 1; TOTAL_ESTS:2; ES...    32  0.17
MGCM008DH08F.B mgcm008dH08f.b LENGTH:274bp ; DIRECTION:0 ; CLONE...    30  0.67
CL257CT303CN725 cl257ct303cn725 COVERAGE:1.0; CRAWID: 2; TOTAL_E...    30  0.67
MGCM007DF06F.B mgcm007dF06f.b LENGTH:418bp ; DIRECTION:0 ; CLONE...    28  2.7
GI14181494 gi14181494 LENGTH:671bp ; DIRECTION:0 ; CLONE: n/a ; ...    28  2.7
GI14181380 gi14181380 LENGTH:795bp ; DIRECTION:0 ; CLONE: n/a ; ...    28  2.7
GI14180322 gi14180322 LENGTH:623bp ; DIRECTION:0 ; CLONE: n/a ; ...    28  2.7
CL848CT944CN1719 cl848ct944cn1719 COVERAGE:0.98; CRAWID: 1; TOTA...    28  2.7
CL1369CT1472CN2266 cl1369ct1472cn2266 COVERAGE:0.99; CRAWID: 1; ...    28  2.7

>CL4CT6CN15 cl4ct6cn15 COVERAGE:0.97; CRAWID: 1; TOTAL_ESTS:2;
           ESTS:gi14181587,gi3392261g; L
          Length = 943

 Score = 32.2 bits (16), Expect = 0.17
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 160 gacacagtcaaccttg 175
           ||||||||||||||||
Sbjct: 308 gacacagtcaaccttg 323



>MGCM008DH08F.B mgcm008dH08f.b LENGTH:274bp ; DIRECTION:0 ; CLONE:
           n/a ; CLONELIB: n/a ; TISSUE:
          Length = 274

 Score = 30.2 bits (15), Expect = 0.67
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 98  gggaggtgatgctga 112
           |||||||||||||||
Sbjct: 168 gggaggtgatgctga 182



>CL257CT303CN725 cl257ct303cn725 COVERAGE:1.0; CRAWID: 2;
           TOTAL_ESTS:1; ESTS:gi3391515g; LENGTH:9
          Length = 961

 Score = 30.2 bits (15), Expect = 0.67
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 48  tgacggcactagttt 62
           |||||||||||||||
Sbjct: 805 tgacggcactagttt 791



>MGCM007DF06F.B mgcm007dF06f.b LENGTH:418bp ; DIRECTION:0 ; CLONE:
           n/a ; CLONELIB: n/a ; TISSUE:
          Length = 418

 Score = 28.2 bits (14), Expect = 2.7
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 34  ggctacatcgccat 47
           ||||||||||||||
Sbjct: 162 ggctacatcgccat 175



>GI14181494 gi14181494 LENGTH:671bp ; DIRECTION:0 ; CLONE: n/a ;
           CLONELIB: n/a ; TISSUE:[]
          Length = 671

 Score = 28.2 bits (14), Expect = 2.7
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 300 tggcgcgaaccaat 313
           ||||||||||||||
Sbjct: 71  tggcgcgaaccaat 58



>GI14181380 gi14181380 LENGTH:795bp ; DIRECTION:0 ; CLONE: n/a ;
           CLONELIB: n/a ; TISSUE:[]
          Length = 795

 Score = 28.2 bits (14), Expect = 2.7
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                             
Query: 88  gagggctggtgggaggtg 105
           ||||| ||||||||||||
Sbjct: 664 gaggggtggtgggaggtg 647



>GI14180322 gi14180322 LENGTH:623bp ; DIRECTION:0 ; CLONE: n/a ;
           CLONELIB: n/a ; TISSUE:[]
          Length = 623

 Score = 28.2 bits (14), Expect = 2.7
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 66  cgtcaccaaggtca 79
           ||||||||||||||
Sbjct: 347 cgtcaccaaggtca 334



>CL848CT944CN1719 cl848ct944cn1719 COVERAGE:0.98; CRAWID: 1;
           TOTAL_ESTS:5; ESTS:mgmy003aG04f.b,mgc
          Length = 541

 Score = 28.2 bits (14), Expect = 2.7
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                             
Query: 173 ttgaggttgacatgatgg 190
           |||||| |||||||||||
Sbjct: 216 ttgaggatgacatgatgg 199



>CL1369CT1472CN2266 cl1369ct1472cn2266 COVERAGE:0.99; CRAWID: 1;
           TOTAL_ESTS:2; ESTS:mgns012aC12f.b,m
          Length = 639

 Score = 28.2 bits (14), Expect = 2.7
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 41  tcgccattgacggc 54
           ||||||||||||||
Sbjct: 378 tcgccattgacggc 365



  Database: /phillip/Ncr/Mgr_IFAFSGB_nr
    Posted date:  Mar 22, 2002  5:31 PM
  Number of letters in database: 2,543,711
  Number of sequences in database:  4717
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 513
Number of Sequences: 4717
Number of extensions: 513
Number of successful extensions: 143
Number of sequences better than 10.0: 9
length of query: 357
length of database: 2,543,711
effective HSP length: 15
effective length of query: 342
effective length of database: 2,472,956
effective search space: 845750952
effective search space used: 845750952
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)