BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1607_A11_B21ZS5.seq
(296 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGNS010BB06F.B mgns010bB06f.b LENGTH:500bp ; DIRECTION:0 ; CLONE... 28 2.2
MGCM008DA01F.B mgcm008dA01f.b LENGTH:187bp ; DIRECTION:0 ; CLONE... 28 2.2
GI3392296G gi3392296g LENGTH:823bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 2.2
CL726CT811CN1583 cl726ct811cn1583 COVERAGE:1.0; CRAWID: 1; TOTAL... 28 2.2
CL530CT604CN1325 cl530ct604cn1325 COVERAGE:1.0; CRAWID: 1; TOTAL... 28 2.2
CL1370CT1473CN2267 cl1370ct1473cn2267 COVERAGE:0.97; CRAWID: 1; ... 28 2.2
MGCS011CH11F.B mgcs011cH11f.b LENGTH:272bp ; DIRECTION:0 ; CLONE... 26 8.6
MGCS005DF01F.B mgcs005dF01f.b LENGTH:510bp ; DIRECTION:0 ; CLONE... 26 8.6
MGCM005AC03F.B mgcm005aC03f.b LENGTH:424bp ; DIRECTION:0 ; CLONE... 26 8.6
GI3391677G gi3391677g LENGTH:798bp ; DIRECTION:0 ; CLONE: n/a ; ... 26 8.6
GI3391608G gi3391608g LENGTH:997bp ; DIRECTION:0 ; CLONE: n/a ; ... 26 8.6
CL951CT1050CN1830 cl951ct1050cn1830 COVERAGE:0.98; CRAWID: 1; TO... 26 8.6
CL884CT983CN1758 cl884ct983cn1758 COVERAGE:1.0; CRAWID: 1; TOTAL... 26 8.6
CL797CT886CN1660 cl797ct886cn1660 COVERAGE:0.99; CRAWID: 1; TOTA... 26 8.6
CL721CT806CN1577 cl721ct806cn1577 COVERAGE:0.99; CRAWID: 1; TOTA... 26 8.6
CL661CT744CN1511 cl661ct744cn1511 COVERAGE:0.98; CRAWID: 1; TOTA... 26 8.6
CL580CT654CN1399 cl580ct654cn1399 COVERAGE:0.98; CRAWID: 1; TOTA... 26 8.6
CL1273CT1376CN2167 cl1273ct1376cn2167 COVERAGE:1.0; CRAWID: 1; T... 26 8.6
>MGNS010BB06F.B mgns010bB06f.b LENGTH:500bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 500
Score = 28.2 bits (14), Expect = 2.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 169 agcttgggtggatg 182
||||||||||||||
Sbjct: 165 agcttgggtggatg 178
>MGCM008DA01F.B mgcm008dA01f.b LENGTH:187bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 187
Score = 28.2 bits (14), Expect = 2.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 120 agaacatcacggcc 133
||||||||||||||
Sbjct: 10 agaacatcacggcc 23
>GI3392296G gi3392296g LENGTH:823bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 823
Score = 28.2 bits (14), Expect = 2.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 127 cacggcccatgcag 140
||||||||||||||
Sbjct: 249 cacggcccatgcag 262
>CL726CT811CN1583 cl726ct811cn1583 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgmy001aC02f.b,mgmy
Length = 615
Score = 28.2 bits (14), Expect = 2.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 112 acataccaagaaca 125
||||||||||||||
Sbjct: 297 acataccaagaaca 310
>CL530CT604CN1325 cl530ct604cn1325 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:1; ESTS:gi3391978g; LENGTH:
Length = 822
Score = 28.2 bits (14), Expect = 2.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 4 ctgcgacgtaggcc 17
||||||||||||||
Sbjct: 395 ctgcgacgtaggcc 382
>CL1370CT1473CN2267 cl1370ct1473cn2267 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns012aH03f.b,m
Length = 445
Score = 28.2 bits (14), Expect = 2.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 158 agaattgttgaagc 171
||||||||||||||
Sbjct: 205 agaattgttgaagc 218
>MGCS011CH11F.B mgcs011cH11f.b LENGTH:272bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 272
Score = 26.3 bits (13), Expect = 8.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 28 cggcttggagggc 40
|||||||||||||
Sbjct: 66 cggcttggagggc 54
>MGCS005DF01F.B mgcs005dF01f.b LENGTH:510bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 510
Score = 26.3 bits (13), Expect = 8.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 99 ctggaagatttgg 111
|||||||||||||
Sbjct: 339 ctggaagatttgg 327
>MGCM005AC03F.B mgcm005aC03f.b LENGTH:424bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 424
Score = 26.3 bits (13), Expect = 8.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 202 tgttcataaccca 214
|||||||||||||
Sbjct: 285 tgttcataaccca 297
>GI3391677G gi3391677g LENGTH:798bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 798
Score = 26.3 bits (13), Expect = 8.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 116 accaagaacatca 128
|||||||||||||
Sbjct: 342 accaagaacatca 354
>GI3391608G gi3391608g LENGTH:997bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 997
Score = 26.3 bits (13), Expect = 8.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 252 tgcacaggcatat 264
|||||||||||||
Sbjct: 489 tgcacaggcatat 501
>CL951CT1050CN1830 cl951ct1050cn1830 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:12; ESTS:mgcm001aA01f.b,m
Length = 782
Score = 26.3 bits (13), Expect = 8.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 29 ggcttggagggct 41
|||||||||||||
Sbjct: 281 ggcttggagggct 293
>CL884CT983CN1758 cl884ct983cn1758 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgmy003dF08f.b,mgns
Length = 693
Score = 26.3 bits (13), Expect = 8.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 263 atgatccgtactg 275
|||||||||||||
Sbjct: 78 atgatccgtactg 90
>CL797CT886CN1660 cl797ct886cn1660 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:7; ESTS:mgmy002aB12f.b,mgm
Length = 443
Score = 26.3 bits (13), Expect = 8.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 277 cacattcacaatg 289
|||||||||||||
Sbjct: 55 cacattcacaatg 67
>CL721CT806CN1577 cl721ct806cn1577 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:7; ESTS:mgmy001aA05f.b,mgm
Length = 603
Score = 26.3 bits (13), Expect = 8.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 167 gaagcttgggtgg 179
|||||||||||||
Sbjct: 135 gaagcttgggtgg 123
>CL661CT744CN1511 cl661ct744cn1511 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgap007aC08f.b,mga
Length = 536
Score = 26.3 bits (13), Expect = 8.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 230 gcatcgtgcccat 242
|||||||||||||
Sbjct: 335 gcatcgtgcccat 323
>CL580CT654CN1399 cl580ct654cn1399 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:3; ESTS:gi3391723g,mgcs002
Length = 1162
Score = 26.3 bits (13), Expect = 8.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 237 gcccatggatcgt 249
|||||||||||||
Sbjct: 191 gcccatggatcgt 179
>CL1273CT1376CN2167 cl1273ct1376cn2167 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns001bF12f.b,mg
Length = 313
Score = 26.3 bits (13), Expect = 8.6
Identities = 16/17 (94%)
Strand = Plus / Minus
Query: 254 cacaggcatatgatccg 270
|||||||||||| ||||
Sbjct: 172 cacaggcatatggtccg 156
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 303
Number of Sequences: 4717
Number of extensions: 303
Number of successful extensions: 82
Number of sequences better than 10.0: 18
length of query: 296
length of database: 2,543,711
effective HSP length: 15
effective length of query: 281
effective length of database: 2,472,956
effective search space: 694900636
effective search space used: 694900636
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)