BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1607_B02_D03ZS5.seq
(91 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGNS011DA11F.B mgns011dA11f.b LENGTH:470bp ; DIRECTION:0 ; CLONE... 28 0.61
CL320CT374CN851 cl320ct374cn851 COVERAGE:0.99; CRAWID: 1; TOTAL_... 26 2.4
CL19CT25CN83 cl19ct25cn83 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:3... 26 2.4
CL179CT216CN565 cl179ct216cn565 COVERAGE:0.99; CRAWID: 1; TOTAL_... 26 2.4
MGNS013DG09F.B mgns013dG09f.b LENGTH:442bp ; DIRECTION:0 ; CLONE... 24 9.5
MGNS012AF03F.B mgns012aF03f.b LENGTH:408bp ; DIRECTION:0 ; CLONE... 24 9.5
MGNS002BE04F.B mgns002bE04f.b LENGTH:293bp ; DIRECTION:0 ; CLONE... 24 9.5
MGMY003DA07F.B mgmy003dA07f.b LENGTH:530bp ; DIRECTION:0 ; CLONE... 24 9.5
MGCS006BE06F.B mgcs006bE06f.b LENGTH:426bp ; DIRECTION:0 ; CLONE... 24 9.5
MGCM012CD11F.B mgcm012cD11f.b LENGTH:395bp ; DIRECTION:0 ; CLONE... 24 9.5
MGCM012AC08F.B mgcm012aC08f.b LENGTH:409bp ; DIRECTION:0 ; CLONE... 24 9.5
MGCM001CA12F.B mgcm001cA12f.b LENGTH:274bp ; DIRECTION:0 ; CLONE... 24 9.5
CL92CT125CN396 cl92ct125cn396 COVERAGE:0.97; CRAWID: 1; TOTAL_ES... 24 9.5
CL809CT900CN1674 cl809ct900cn1674 COVERAGE:0.98; CRAWID: 1; TOTA... 24 9.5
CL785CT874CN1648 cl785ct874cn1648 COVERAGE:1.0; CRAWID: 1; TOTAL... 24 9.5
CL621CT699CN1452 cl621ct699cn1452 COVERAGE:0.97; CRAWID: 2; TOTA... 24 9.5
CL419CT487CN1100 cl419ct487cn1100 COVERAGE:1.0; CRAWID: 2; TOTAL... 24 9.5
CL147CT184CN507 cl147ct184cn507 COVERAGE:0.99; CRAWID: 1; TOTAL_... 24 9.5
CL1356CT1459CN2251 cl1356ct1459cn2251 COVERAGE:0.99; CRAWID: 1; ... 24 9.5
CL1280CT1383CN2174 cl1280ct1383cn2174 COVERAGE:0.99; CRAWID: 1; ... 24 9.5
CL1206CT1309CN2099 cl1206ct1309cn2099 COVERAGE:0.99; CRAWID: 1; ... 24 9.5
>MGNS011DA11F.B mgns011dA11f.b LENGTH:470bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 470
Score = 28.2 bits (14), Expect = 0.61
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 18 agcaagtcgtcgct 31
||||||||||||||
Sbjct: 257 agcaagtcgtcgct 270
>CL320CT374CN851 cl320ct374cn851 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:3; ESTS:gi14180820,mgns007b
Length = 841
Score = 26.3 bits (13), Expect = 2.4
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 52 atgatttgacagt 64
|||||||||||||
Sbjct: 564 atgatttgacagt 552
>CL19CT25CN83 cl19ct25cn83 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:3;
ESTS:gi14181562,mgcm007dE01
Length = 751
Score = 26.3 bits (13), Expect = 2.4
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 14 aatgagcaagtcg 26
|||||||||||||
Sbjct: 150 aatgagcaagtcg 138
>CL179CT216CN565 cl179ct216cn565 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:4; ESTS:gi14181237,mgmy001d
Length = 1202
Score = 26.3 bits (13), Expect = 2.4
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 16 tgagcaagtcgtc 28
|||||||||||||
Sbjct: 588 tgagcaagtcgtc 600
>MGNS013DG09F.B mgns013dG09f.b LENGTH:442bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 442
Score = 24.3 bits (12), Expect = 9.5
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 49 gaaatgatttga 60
||||||||||||
Sbjct: 85 gaaatgatttga 74
>MGNS012AF03F.B mgns012aF03f.b LENGTH:408bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 408
Score = 24.3 bits (12), Expect = 9.5
Identities = 15/16 (93%)
Strand = Plus / Plus
Query: 21 aagtcgtcgctggagc 36
||||||||||| ||||
Sbjct: 286 aagtcgtcgctcgagc 301
>MGNS002BE04F.B mgns002bE04f.b LENGTH:293bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 293
Score = 24.3 bits (12), Expect = 9.5
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 21 aagtcgtcgctg 32
||||||||||||
Sbjct: 20 aagtcgtcgctg 9
>MGMY003DA07F.B mgmy003dA07f.b LENGTH:530bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 530
Score = 24.3 bits (12), Expect = 9.5
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 28 cgctggagcgcc 39
||||||||||||
Sbjct: 188 cgctggagcgcc 199
>MGCS006BE06F.B mgcs006bE06f.b LENGTH:426bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 426
Score = 24.3 bits (12), Expect = 9.5
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 30 ctggagcgccga 41
||||||||||||
Sbjct: 319 ctggagcgccga 330
>MGCM012CD11F.B mgcm012cD11f.b LENGTH:395bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 395
Score = 24.3 bits (12), Expect = 9.5
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 52 atgatttgacag 63
||||||||||||
Sbjct: 50 atgatttgacag 39
>MGCM012AC08F.B mgcm012aC08f.b LENGTH:409bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 409
Score = 24.3 bits (12), Expect = 9.5
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 39 cgattgaaatga 50
||||||||||||
Sbjct: 37 cgattgaaatga 26
>MGCM001CA12F.B mgcm001cA12f.b LENGTH:274bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 274
Score = 24.3 bits (12), Expect = 9.5
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 18 agcaagtcgtcg 29
||||||||||||
Sbjct: 185 agcaagtcgtcg 174
>CL92CT125CN396 cl92ct125cn396 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:17; ESTS:gi14181415,gi141812
Length = 1013
Score = 24.3 bits (12), Expect = 9.5
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 44 gaaatgaaatga 55
||||||||||||
Sbjct: 61 gaaatgaaatga 50
>CL809CT900CN1674 cl809ct900cn1674 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:17; ESTS:mgmy002aH02f.b,mg
Length = 1649
Score = 24.3 bits (12), Expect = 9.5
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 27 tcgctggagcgc 38
||||||||||||
Sbjct: 124 tcgctggagcgc 113
>CL785CT874CN1648 cl785ct874cn1648 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgmy001dG01f.b,mgmy
Length = 493
Score = 24.3 bits (12), Expect = 9.5
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 3 tttagtttagta 14
||||||||||||
Sbjct: 426 tttagtttagta 415
>CL621CT699CN1452 cl621ct699cn1452 COVERAGE:0.97; CRAWID: 2;
TOTAL_ESTS:21; ESTS:gi3391406g,mgmy00
Length = 1156
Score = 24.3 bits (12), Expect = 9.5
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 16 tgagcaagtcgt 27
||||||||||||
Sbjct: 303 tgagcaagtcgt 292
>CL419CT487CN1100 cl419ct487cn1100 COVERAGE:1.0; CRAWID: 2;
TOTAL_ESTS:1; ESTS:gi14180415; LENGTH:
Length = 699
Score = 24.3 bits (12), Expect = 9.5
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 65 taatctgtaata 76
||||||||||||
Sbjct: 423 taatctgtaata 412
>CL147CT184CN507 cl147ct184cn507 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi14181318,gi141802
Length = 851
Score = 24.3 bits (12), Expect = 9.5
Identities = 12/12 (100%)
Strand = Plus / Minus
Query: 44 gaaatgaaatga 55
||||||||||||
Sbjct: 65 gaaatgaaatga 54
>CL1356CT1459CN2251 cl1356ct1459cn2251 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns010cH02f.b,m
Length = 655
Score = 24.3 bits (12), Expect = 9.5
Identities = 15/16 (93%)
Strand = Plus / Minus
Query: 45 aaatgaaatgatttga 60
||||||||||| ||||
Sbjct: 62 aaatgaaatgacttga 47
>CL1280CT1383CN2174 cl1280ct1383cn2174 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgns001cF03f.b,m
Length = 527
Score = 24.3 bits (12), Expect = 9.5
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 53 tgatttgacagt 64
||||||||||||
Sbjct: 465 tgatttgacagt 476
>CL1206CT1309CN2099 cl1206ct1309cn2099 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgcm008bF01f.b,m
Length = 704
Score = 24.3 bits (12), Expect = 9.5
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 31 tggagcgccgat 42
||||||||||||
Sbjct: 200 tggagcgccgat 211
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 72
Number of Sequences: 4717
Number of extensions: 72
Number of successful extensions: 72
Number of sequences better than 10.0: 21
length of query: 91
length of database: 2,543,711
effective HSP length: 13
effective length of query: 78
effective length of database: 2,482,390
effective search space: 193626420
effective search space used: 193626420
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 12 (24.3 bits)