TBLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1607_B02_D03ZS5.seq
(91 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CL29CT35CN122 cl29ct35cn122 COVERAGE:1.0; CRAWID: 3; TOTAL_ESTS:... 22 1.7
CL293CT345CN802 cl293ct345cn802 COVERAGE:0.99; CRAWID: 1; TOTAL_... 21 2.4
CL1389CT1492CN2288 cl1389ct1492cn2288 COVERAGE:0.98; CRAWID: 1; ... 21 2.4
CL14CT19CN72 cl14ct19cn72 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:2... 21 2.4
MGCM003AC11F.B mgcm003aC11f.b LENGTH:416bp ; DIRECTION:0 ; CLONE... 21 3.2
MGAP007CC08F.B mgap007cC08f.b LENGTH:520bp ; DIRECTION:0 ; CLONE... 21 3.2
MGMY004AA10F.B mgmy004aA10f.b LENGTH:474bp ; DIRECTION:0 ; CLONE... 20 4.5
MGCM004AF08F.B mgcm004aF08f.b LENGTH:280bp ; DIRECTION:0 ; CLONE... 20 4.5
CL202CT242CN626 cl202ct242cn626 COVERAGE:0.98; CRAWID: 1; TOTAL_... 20 4.5
GI3391846G gi3391846g LENGTH:754bp ; DIRECTION:0 ; CLONE: n/a ; ... 20 6.1
MGCM004CC04F.B mgcm004cC04f.b LENGTH:390bp ; DIRECTION:0 ; CLONE... 20 6.1
MGCM003AC03F.B mgcm003aC03f.b LENGTH:429bp ; DIRECTION:0 ; CLONE... 20 6.1
MGNS011CD07F.B mgns011cD07f.b LENGTH:377bp ; DIRECTION:0 ; CLONE... 19 8.4
MGNS010BB06F.B mgns010bB06f.b LENGTH:500bp ; DIRECTION:0 ; CLONE... 19 8.4
MGMY002DE05F.B mgmy002dE05f.b LENGTH:197bp ; DIRECTION:0 ; CLONE... 19 8.4
MGCM007BE04F.B mgcm007bE04f.b LENGTH:433bp ; DIRECTION:0 ; CLONE... 19 8.4
>CL29CT35CN122 cl29ct35cn122 COVERAGE:1.0; CRAWID: 3; TOTAL_ESTS:1;
ESTS:gi3392253g; LENGTH:922
Length = 922
Score = 21.7 bits (41), Expect = 1.7
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1 / +1
Query: 70 RLTVKSFHFNRRSSDD 23
RLT+ S H NR S D+
Sbjct: 550 RLTLFSPHLNRTSQDN 597
>CL293CT345CN802 cl293ct345cn802 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi14180921,mgcs006a
Length = 723
Score = 21.2 bits (40), Expect = 2.4
Identities = 9/26 (34%), Positives = 12/26 (45%)
Frame = -1 / +2
Query: 79 RYYRLTVKSFHFNRRSSDDLLITKLK 2
RYY F N+R D++ I K
Sbjct: 110 RYYPRLTLDFETNKRICDEIAIIASK 187
>CL1389CT1492CN2288 cl1389ct1492cn2288 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgcs002bG04f.b,m
Length = 476
Score = 21.2 bits (40), Expect = 2.4
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -2 / -1
Query: 48 ISIGAPATTCSLLN 7
I +GAPAT LN
Sbjct: 248 ICVGAPATNLEYLN 207
>CL14CT19CN72 cl14ct19cn72 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:2;
ESTS:gi14181569,gi14181121;
Length = 1068
Score = 21.2 bits (40), Expect = 2.4
Identities = 6/11 (54%), Positives = 10/11 (90%)
Frame = -2 / +2
Query: 48 ISIGAPATTCS 16
++ G+P+TTCS
Sbjct: 473 LTTGSPSTTCS 505
>MGCM003AC11F.B mgcm003aC11f.b LENGTH:416bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 416
Score = 20.8 bits (39), Expect = 3.2
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = -3 / +3
Query: 74 LQINCQIISFQSAL 33
L+I CQ+ S AL
Sbjct: 39 LKIGCQLFSTAQAL 80
>MGAP007CC08F.B mgap007cC08f.b LENGTH:520bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 520
Score = 20.8 bits (39), Expect = 3.2
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -3 / +3
Query: 65 NCQIISFQSALQRRLAHY 12
NC+ F LQR L H+
Sbjct: 390 NCRGAGFGLVLQRPLCHH 443
>MGMY004AA10F.B mgmy004aA10f.b LENGTH:474bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 474
Score = 20.3 bits (38), Expect = 4.5
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -1 / -2
Query: 70 RLTVKSFHFNRRSSDDL 20
RL VKS H S DL
Sbjct: 404 RLAVKSGHAVLESDQDL 354
>MGCM004AF08F.B mgcm004aF08f.b LENGTH:280bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 280
Score = 20.3 bits (38), Expect = 4.5
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2 / -3
Query: 36 APATTCS 16
APATTCS
Sbjct: 227 APATTCS 207
>CL202CT242CN626 cl202ct242cn626 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:3; ESTS:gi14181172,gi141811
Length = 988
Score = 20.3 bits (38), Expect = 4.5
Identities = 7/23 (30%), Positives = 13/23 (56%)
Frame = -1 / -2
Query: 79 RYYRLTVKSFHFNRRSSDDLLIT 11
R+YRL + HF R+ + ++
Sbjct: 789 RHYRLGLAVSHFGRQQHSPISLS 721
>GI3391846G gi3391846g LENGTH:754bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 754
Score = 19.8 bits (37), Expect = 6.1
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = -2 / +2
Query: 39 GAPATTCS 16
G P+TTCS
Sbjct: 398 GGPSTTCS 421
>MGCM004CC04F.B mgcm004cC04f.b LENGTH:390bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 390
Score = 19.8 bits (37), Expect = 6.1
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = -2 / -2
Query: 63 LSNHFISIGAPAT 25
LSNH++ + A T
Sbjct: 143 LSNHYVGVHAQVT 105
>MGCM003AC03F.B mgcm003aC03f.b LENGTH:429bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 429
Score = 19.8 bits (37), Expect = 6.1
Identities = 5/15 (33%), Positives = 11/15 (73%)
Frame = -1 / -1
Query: 73 YRLTVKSFHFNRRSS 29
YR+T+ S+H ++ +
Sbjct: 54 YRVTINSYH*KKKKN 10
>MGNS011CD07F.B mgns011cD07f.b LENGTH:377bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 377
Score = 19.4 bits (36), Expect = 8.4
Identities = 6/7 (85%), Positives = 7/7 (99%)
Frame = +1 / +1
Query: 67 ICNIYLL 87
+CNIYLL
Sbjct: 19 LCNIYLL 39
>MGNS010BB06F.B mgns010bB06f.b LENGTH:500bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 500
Score = 19.4 bits (36), Expect = 8.4
Identities = 6/14 (42%), Positives = 10/14 (70%)
Frame = -1 / +3
Query: 49 HFNRRSSDDLLITK 8
HFN + +D ++ TK
Sbjct: 321 HFNWKRNDLVISTK 362
>MGMY002DE05F.B mgmy002dE05f.b LENGTH:197bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 197
Score = 19.4 bits (36), Expect = 8.4
Identities = 7/12 (58%), Positives = 9/12 (74%)
Frame = -1 / -3
Query: 70 RLTVKSFHFNRR 35
RLT+ HF+RR
Sbjct: 117 RLTLDCSHFSRR 82
>MGCM007BE04F.B mgcm007bE04f.b LENGTH:433bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 433
Score = 19.4 bits (36), Expect = 8.4
Identities = 8/13 (61%), Positives = 9/13 (68%)
Frame = -2 / +1
Query: 45 SIGAPATTCSLLN 7
S AP+TT S LN
Sbjct: 37 SSNAPSTTSSRLN 75
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
0.318 0.135 0.401
Matrix: BLOSUM62
Number of Hits to DB: 382380
Number of Sequences: 4717
Number of extensions: 1216
Number of successful extensions: 252
Number of sequences better than 10.0: 23
length of query: 30
length of database: 847,903
effective HSP length: 22
effective length of query: 7
effective length of database: 744,129
effective search space: 5208903
effective search space used: 5208903
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 36 (19.4 bits)