BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1607_D08_H15ZS5.seq
(246 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GI14181372 gi14181372 LENGTH:653bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 1.8
CL226CT268CN668 cl226ct268cn668 COVERAGE:0.99; CRAWID: 1; TOTAL_... 28 1.8
CL199CT239CN618 cl199ct239cn618 COVERAGE:0.97; CRAWID: 1; TOTAL_... 28 1.8
MGNS013AG10F.B mgns013aG10f.b LENGTH:216bp ; DIRECTION:0 ; CLONE... 26 7.1
MGNS012AF03F.B mgns012aF03f.b LENGTH:408bp ; DIRECTION:0 ; CLONE... 26 7.1
MGNS008CG02F.B mgns008cG02f.b LENGTH:540bp ; DIRECTION:0 ; CLONE... 26 7.1
MGNS007BG04F.B mgns007bG04f.b LENGTH:485bp ; DIRECTION:0 ; CLONE... 26 7.1
MGCS008BD07F.B mgcs008bD07f.b LENGTH:429bp ; DIRECTION:0 ; CLONE... 26 7.1
MGCS006DH04F.B mgcs006dH04f.b LENGTH:440bp ; DIRECTION:0 ; CLONE... 26 7.1
MGCM010CC11F.B mgcm010cC11f.b LENGTH:425bp ; DIRECTION:0 ; CLONE... 26 7.1
GI14180632 gi14180632 LENGTH:648bp ; DIRECTION:0 ; CLONE: n/a ; ... 26 7.1
GI14180563 gi14180563 LENGTH:696bp ; DIRECTION:0 ; CLONE: n/a ; ... 26 7.1
CL70CT100CN355 cl70ct100cn355 COVERAGE:0.99; CRAWID: 1; TOTAL_ES... 26 7.1
CL434CT504CN1140 cl434ct504cn1140 COVERAGE:1.0; CRAWID: 1; TOTAL... 26 7.1
CL373CT437CN960 cl373ct437cn960 COVERAGE:0.98; CRAWID: 1; TOTAL_... 26 7.1
CL334CT393CN873 cl334ct393cn873 COVERAGE:0.97; CRAWID: 1; TOTAL_... 26 7.1
>GI14181372 gi14181372 LENGTH:653bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 653
Score = 28.2 bits (14), Expect = 1.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 158 ctggctggactgga 171
||||||||||||||
Sbjct: 539 ctggctggactgga 526
>CL226CT268CN668 cl226ct268cn668 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:6; ESTS:gi14181112,gi141809
Length = 1076
Score = 28.2 bits (14), Expect = 1.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 55 cgagagcgtcacgg 68
||||||||||||||
Sbjct: 77 cgagagcgtcacgg 64
>CL199CT239CN618 cl199ct239cn618 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:3; ESTS:gi14181179,gi339156
Length = 1106
Score = 28.2 bits (14), Expect = 1.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 31 caagaggagcagtt 44
||||||||||||||
Sbjct: 648 caagaggagcagtt 661
>MGNS013AG10F.B mgns013aG10f.b LENGTH:216bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 216
Score = 26.3 bits (13), Expect = 7.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 206 atgacggagcggg 218
|||||||||||||
Sbjct: 199 atgacggagcggg 211
>MGNS012AF03F.B mgns012aF03f.b LENGTH:408bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 408
Score = 26.3 bits (13), Expect = 7.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 111 aaagggcgtcagg 123
|||||||||||||
Sbjct: 264 aaagggcgtcagg 252
>MGNS008CG02F.B mgns008cG02f.b LENGTH:540bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 540
Score = 26.3 bits (13), Expect = 7.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 210 cggagcgggcggg 222
|||||||||||||
Sbjct: 366 cggagcgggcggg 354
>MGNS007BG04F.B mgns007bG04f.b LENGTH:485bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 485
Score = 26.3 bits (13), Expect = 7.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 11 tggaagagctcgc 23
|||||||||||||
Sbjct: 290 tggaagagctcgc 278
>MGCS008BD07F.B mgcs008bD07f.b LENGTH:429bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 429
Score = 26.3 bits (13), Expect = 7.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 82 ttgtctcatgggt 94
|||||||||||||
Sbjct: 264 ttgtctcatgggt 252
>MGCS006DH04F.B mgcs006dH04f.b LENGTH:440bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 440
Score = 26.3 bits (13), Expect = 7.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 166 actggactggatt 178
|||||||||||||
Sbjct: 95 actggactggatt 107
>MGCM010CC11F.B mgcm010cC11f.b LENGTH:425bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 425
Score = 26.3 bits (13), Expect = 7.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 100 tgaaagaagtaaa 112
|||||||||||||
Sbjct: 142 tgaaagaagtaaa 130
>GI14180632 gi14180632 LENGTH:648bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 648
Score = 26.3 bits (13), Expect = 7.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 40 cagttcgccgcag 52
|||||||||||||
Sbjct: 142 cagttcgccgcag 154
>GI14180563 gi14180563 LENGTH:696bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 696
Score = 26.3 bits (13), Expect = 7.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 108 gtaaaagggcgtc 120
|||||||||||||
Sbjct: 479 gtaaaagggcgtc 467
>CL70CT100CN355 cl70ct100cn355 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi14181455,mgcs003bB
Length = 628
Score = 26.3 bits (13), Expect = 7.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 37 gagcagttcgccg 49
|||||||||||||
Sbjct: 424 gagcagttcgccg 436
>CL434CT504CN1140 cl434ct504cn1140 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:1; ESTS:gi14180334; LENGTH:
Length = 794
Score = 26.3 bits (13), Expect = 7.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 198 attttgtcatgac 210
|||||||||||||
Sbjct: 117 attttgtcatgac 129
>CL373CT437CN960 cl373ct437cn960 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:3; ESTS:gi14180595,mgmy004c
Length = 666
Score = 26.3 bits (13), Expect = 7.1
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 114 gggcgtcagggtatttt 130
||||||||||| |||||
Sbjct: 579 gggcgtcagggaatttt 595
>CL334CT393CN873 cl334ct393cn873 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:33; ESTS:gi14180776,gi14180
Length = 1639
Score = 26.3 bits (13), Expect = 7.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 113 agggcgtcagggt 125
|||||||||||||
Sbjct: 458 agggcgtcagggt 446
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 287
Number of Sequences: 4717
Number of extensions: 287
Number of successful extensions: 75
Number of sequences better than 10.0: 16
length of query: 246
length of database: 2,543,711
effective HSP length: 14
effective length of query: 232
effective length of database: 2,477,673
effective search space: 574820136
effective search space used: 574820136
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)