TBLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1607_D08_H15ZS5.seq
(246 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGCM003AC09F.B mgcm003aC09f.b LENGTH:412bp ; DIRECTION:0 ; CLONE... 28 0.11
MGNS013AG10F.B mgns013aG10f.b LENGTH:216bp ; DIRECTION:0 ; CLONE... 23 0.28
CL995CT1096CN1878 cl995ct1096cn1878 COVERAGE:0.98; CRAWID: 1; TO... 25 1.1
GI14181269 gi14181269 LENGTH:651bp ; DIRECTION:0 ; CLONE: n/a ; ... 25 1.1
CL1CT3CN5 cl1ct3cn5 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:22; EST... 24 1.5
CL364CT427CN947 cl364ct427cn947 COVERAGE:0.99; CRAWID: 1; TOTAL_... 24 1.5
CL674CT757CN1526 cl674ct757cn1526 COVERAGE:0.98; CRAWID: 1; TOTA... 24 2.0
CL1048CT1149CN1932 cl1048ct1149cn1932 COVERAGE:0.99; CRAWID: 1; ... 24 2.0
MGCM010DG09F.B mgcm010dG09f.b LENGTH:325bp ; DIRECTION:0 ; CLONE... 24 2.0
GI3391835G gi3391835g LENGTH:763bp ; DIRECTION:0 ; CLONE: n/a ; ... 24 2.0
CL8CT10CN20 cl8ct10cn20 COVERAGE:0.99; CRAWID: 3; TOTAL_ESTS:11;... 24 2.0
CL282CT334CN786 cl282ct334cn786 COVERAGE:0.98; CRAWID: 1; TOTAL_... 24 2.7
MGMY001CH04F.B mgmy001cH04f.b LENGTH:364bp ; DIRECTION:0 ; CLONE... 24 2.7
MGNS013CA10F.B mgns013cA10f.b LENGTH:338bp ; DIRECTION:0 ; CLONE... 24 2.7
CL21CT27CN91 cl21ct27cn91 COVERAGE:0.99; CRAWID: 2; TOTAL_ESTS:6... 23 3.8
CL634CT712CN1476 cl634ct712cn1476 COVERAGE:0.98; CRAWID: 1; TOTA... 23 3.8
GI3392063G gi3392063g LENGTH:840bp ; DIRECTION:0 ; CLONE: n/a ; ... 23 3.8
MGCS010DD10F.B mgcs010dD10f.b LENGTH:327bp ; DIRECTION:0 ; CLONE... 23 3.8
MGMY004AE07F.B mgmy004aE07f.b LENGTH:472bp ; DIRECTION:0 ; CLONE... 23 3.8
GI14180597 gi14180597 LENGTH:1073bp ; DIRECTION:0 ; CLONE: n/a ;... 23 3.8
MGCS006DH04F.B mgcs006dH04f.b LENGTH:440bp ; DIRECTION:0 ; CLONE... 23 5.2
MGNS010CG10F.B mgns010cG10f.b LENGTH:386bp ; DIRECTION:0 ; CLONE... 23 5.2
CL150CT187CN512 cl150ct187cn512 COVERAGE:0.97; CRAWID: 1; TOTAL_... 23 5.2
MGCS009AA04F.B mgcs009aA04f.b LENGTH:541bp ; DIRECTION:0 ; CLONE... 23 5.2
CL685CT768CN1537 cl685ct768cn1537 COVERAGE:0.98; CRAWID: 1; TOTA... 23 5.2
CL106CT139CN421 cl106ct139cn421 COVERAGE:0.99; CRAWID: 1; TOTAL_... 23 5.2
MGCM008AD08F.B mgcm008aD08f.b LENGTH:361bp ; DIRECTION:0 ; CLONE... 23 5.2
CL643CT723CN1488 cl643ct723cn1488 COVERAGE:0.98; CRAWID: 1; TOTA... 23 5.2
CL1213CT1316CN2106 cl1213ct1316cn2106 COVERAGE:0.99; CRAWID: 1; ... 23 5.2
MGCS002DB06F.B mgcs002dB06f.b LENGTH:273bp ; DIRECTION:0 ; CLONE... 22 7.1
GI3391388G gi3391388g LENGTH:976bp ; DIRECTION:0 ; CLONE: n/a ; ... 22 7.1
CL207CT247CN633 cl207ct247cn633 COVERAGE:0.99; CRAWID: 1; TOTAL_... 22 7.1
MGCS001DG05F.B mgcs001dG05f.b LENGTH:297bp ; DIRECTION:0 ; CLONE... 22 7.1
MGCM002AG08F.B mgcm002aG08f.b LENGTH:538bp ; DIRECTION:0 ; CLONE... 22 7.1
MGCM008DC06F.B mgcm008dC06f.b LENGTH:216bp ; DIRECTION:0 ; CLONE... 22 7.1
MGNS001BH12F.B mgns001bH12f.b LENGTH:434bp ; DIRECTION:0 ; CLONE... 22 7.1
MGCS009CA02F.B mgcs009cA02f.b LENGTH:451bp ; DIRECTION:0 ; CLONE... 22 7.1
GI3391638G gi3391638g LENGTH:854bp ; DIRECTION:0 ; CLONE: n/a ; ... 22 7.1
CL92CT125CN396 cl92ct125cn396 COVERAGE:0.97; CRAWID: 1; TOTAL_ES... 22 7.1
MGCS008DH10F.B mgcs008dH10f.b LENGTH:306bp ; DIRECTION:0 ; CLONE... 22 7.1
CL298CT350CN808 cl298ct350cn808 COVERAGE:0.97; CRAWID: 1; TOTAL_... 22 7.1
MGCM001AB02F.B mgcm001aB02f.b LENGTH:374bp ; DIRECTION:0 ; CLONE... 22 7.1
MGNS001DB09F.B mgns001dB09f.b LENGTH:333bp ; DIRECTION:0 ; CLONE... 22 7.1
MGCS009BE01F.B mgcs009bE01f.b LENGTH:439bp ; DIRECTION:0 ; CLONE... 22 9.8
GI3391508G gi3391508g LENGTH:843bp ; DIRECTION:0 ; CLONE: n/a ; ... 22 9.8
CL606CT684CN1434 cl606ct684cn1434 COVERAGE:0.99; CRAWID: 1; TOTA... 22 9.8
CL934CT1033CN1813 cl934ct1033cn1813 COVERAGE:0.99; CRAWID: 1; TO... 22 9.8
CL1206CT1309CN2099 cl1206ct1309cn2099 COVERAGE:0.99; CRAWID: 1; ... 22 9.8
MGCM007AC10F.B mgcm007aC10f.b LENGTH:284bp ; DIRECTION:0 ; CLONE... 22 9.8
MGCM003DE01F.B mgcm003dE01f.b LENGTH:457bp ; DIRECTION:0 ; CLONE... 22 9.8
CL95CT128CN401 cl95ct128cn401 COVERAGE:0.99; CRAWID: 1; TOTAL_ES... 22 9.8
CL126CT161CN464 cl126ct161cn464 COVERAGE:1.0; CRAWID: 1; TOTAL_E... 22 9.8
MGCM006AA06F.B mgcm006aA06f.b LENGTH:580bp ; DIRECTION:0 ; CLONE... 22 9.8
GI3391522G gi3391522g LENGTH:957bp ; DIRECTION:0 ; CLONE: n/a ; ... 22 9.8
CL1000CT1101CN1883 cl1000ct1101cn1883 COVERAGE:0.99; CRAWID: 1; ... 22 9.8
MGMY001AD06F.B mgmy001aD06f.b LENGTH:542bp ; DIRECTION:0 ; CLONE... 22 9.8
CL126CT162CN465 cl126ct162cn465 COVERAGE:0.98; CRAWID: 1; TOTAL_... 22 9.8
MGCM003AF12F.B mgcm003aF12f.b LENGTH:268bp ; DIRECTION:0 ; CLONE... 22 9.8
GI2537267G gi2537267g LENGTH:494bp ; DIRECTION:0 ; CLONE: n/a ; ... 22 9.8
MGCS006AC04F.B mgcs006aC04f.b LENGTH:497bp ; DIRECTION:0 ; CLONE... 22 9.8
MGCM008DE07F.B mgcm008dE07f.b LENGTH:515bp ; DIRECTION:0 ; CLONE... 22 9.8
CL661CT744CN1511 cl661ct744cn1511 COVERAGE:0.98; CRAWID: 1; TOTA... 22 9.8
CL65CT92CN321 cl65ct92cn321 COVERAGE:0.97; CRAWID: 2; TOTAL_ESTS... 22 9.8
>MGCM003AC09F.B mgcm003aC09f.b LENGTH:412bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 412
Score = 28.1 bits (55), Expect = 0.11
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1 / +2
Query: 222 PARSVMTKSQAHPSLIQSSPA 160
P RS S A PSL++SSPA
Sbjct: 47 PCRSSSRPSPARPSLLRSSPA 109
>MGNS013AG10F.B mgns013aG10f.b LENGTH:216bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 216
Score = 23.1 bits (44), Expect(2) = 0.28
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = +2 / +2
Query: 5 CPWKSSLVYKRSSSPQHESVTVESLNCL 88
C W+ S + + +HES T CL
Sbjct: 68 CSWRPSRTRRAALRSRHESSTSARGGCL 151
Score = 20.3 bits (38), Expect(2) = 0.28
Identities = 5/8 (62%), Positives = 7/8 (87%)
Frame = +1 / +3
Query: 196 GFCHDGAG 219
G+ +DGAG
Sbjct: 189 GYVYDGAG 212
>CL995CT1096CN1878 cl995ct1096cn1878 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:4; ESTS:mgcm001cE10f.b,mg
Length = 755
Score = 24.9 bits (48), Expect = 1.1
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -2 / +1
Query: 128 NTLTPFYFFQH 96
N LTP YFF H
Sbjct: 241 NNLTPVYFFSH 273
>GI14181269 gi14181269 LENGTH:651bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 651
Score = 24.9 bits (48), Expect = 1.1
Identities = 8/22 (36%), Positives = 11/22 (49%)
Frame = +1 / +1
Query: 151 NRTGWTGLD*AWMSLGFCHDGA 216
N+T D AW + CH+ A
Sbjct: 451 NKTSCLSCDKAWTDIHVCHESA 516
>CL1CT3CN5 cl1ct3cn5 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:22;
ESTS:gi14181592,gi14181535,gi
Length = 2160
Score = 24.4 bits (47), Expect = 1.5
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -1 / +2
Query: 219 ARSVMTKSQAHPSLIQSSPASPVRQRLAMP 130
AR V + PSL S+P + LAMP
Sbjct: 482 ARGVSSTL*TMPSLASSTPTTSAAASLAMP 571
>CL364CT427CN947 cl364ct427cn947 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:4; ESTS:gi14180665,mgap008d
Length = 892
Score = 24.4 bits (47), Expect = 1.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1 / +2
Query: 213 SVMTKSQAHPSLIQSSPASPVRQRLAMPKYPDALL 109
SV+TKS S+ SPA +++ +P P LL
Sbjct: 728 SVVTKSIPEFSVAVGSPAKVIKKVQPVPDLP*GLL 832
>CL674CT757CN1526 cl674ct757cn1526 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:14; ESTS:mgap007bC10f.b,mg
Length = 978
Score = 24.0 bits (46), Expect = 2.0
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +3 / +2
Query: 3 HVHGRARSSTRGAVRRSTRASRLR 74
H HGR G RRS R R R
Sbjct: 851 HGHGRCPHGRVGPARRSRREGRHR 922
>CL1048CT1149CN1932 cl1048ct1149cn1932 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcm007cB02f.b,m
Length = 394
Score = 24.0 bits (46), Expect = 2.0
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = -3 / -1
Query: 43 TAPLVDERALPWT 5
T L+++ ALPW
Sbjct: 97 TVVLMEDEALPWI 59
>MGCM010DG09F.B mgcm010dG09f.b LENGTH:325bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 325
Score = 24.0 bits (46), Expect = 2.0
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -2 / +1
Query: 134 CQNTLTPFYFF 102
CQN PF+FF
Sbjct: 283 CQNATIPFFFF 315
>GI3391835G gi3391835g LENGTH:763bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 763
Score = 24.0 bits (46), Expect = 2.0
Identities = 11/29 (37%), Positives = 15/29 (50%)
Frame = -1 / -1
Query: 189 HPSLIQSSPASPVRQRLAMPKYPDALLLL 103
HPS + A VRQ P+Y + L L+
Sbjct: 577 HPSHVXVHSALSVRQLXPTPEYGERLSLM 491
>CL8CT10CN20 cl8ct10cn20 COVERAGE:0.99; CRAWID: 3; TOTAL_ESTS:11;
ESTS:gi3392392g,mgcs003bH02
Length = 1230
Score = 24.0 bits (46), Expect = 2.0
Identities = 11/24 (45%), Positives = 13/24 (53%)
Frame = +1 / -1
Query: 19 LARLQEEQFAAARERHG*ESELSH 90
LAR+ + AAA RHG E H
Sbjct: 276 LARVAQRAAAAAVARHGGRCEAGH 205
>CL282CT334CN786 cl282ct334cn786 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:9; ESTS:gi14180955,gi339134
Length = 1150
Score = 23.5 bits (45), Expect = 2.7
Identities = 9/17 (52%), Positives = 11/17 (63%)
Frame = +2 / +3
Query: 8 PWKSSLVYKRSSSPQHE 58
PW S+L RS SP H+
Sbjct: 747 PWVSALA**RSRSPTHD 797
>MGMY001CH04F.B mgmy001cH04f.b LENGTH:364bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 364
Score = 23.5 bits (45), Expect = 2.7
Identities = 12/32 (37%), Positives = 19/32 (58%)
Frame = -1 / -2
Query: 144 RLAMPKYPDALLLLST*PMRQFRLSTVTLSCC 49
RLAMP ++L +S P+R+F L + + C
Sbjct: 219 RLAMP*ENSSMLPVSWEPVRRFSLPSP*TAIC 124
>MGNS013CA10F.B mgns013cA10f.b LENGTH:338bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 338
Score = 23.5 bits (45), Expect = 2.7
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3 / -3
Query: 15 RARSSTRGAVRRSTRASRLR 74
R SS+R RRS RASR R
Sbjct: 306 RCCSSSRRGDRRSGRASRCR 247
>CL21CT27CN91 cl21ct27cn91 COVERAGE:0.99; CRAWID: 2; TOTAL_ESTS:64;
ESTS:gi14181559,gi14181123
Length = 1603
Score = 23.1 bits (44), Expect = 3.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1 / +1
Query: 222 PARSVMTKSQAHPSLIQSSPASPVR 148
PARSV+ + + +SPAS +R
Sbjct: 1189 PARSVLVTPPFWTATLPTSPASSLR 1263
>CL634CT712CN1476 cl634ct712cn1476 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi2537306g,mgmy002
Length = 630
Score = 23.1 bits (44), Expect = 3.8
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -3 / -3
Query: 208 HDKIPGSSKP 179
H IPGSSKP
Sbjct: 355 HSTIPGSSKP 326
>GI3392063G gi3392063g LENGTH:840bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 840
Score = 23.1 bits (44), Expect = 3.8
Identities = 11/21 (52%), Positives = 12/21 (56%)
Frame = +1 / +3
Query: 172 LD*AWMSLGFCHDGAGGLSDS 234
LD*AW S G GG+S S
Sbjct: 234 LD*AWSSTDIYLTGIGGVSIS 296
>MGCS010DD10F.B mgcs010dD10f.b LENGTH:327bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 327
Score = 23.1 bits (44), Expect = 3.8
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -3 / -1
Query: 49 RRTAPLVDERALP 11
RRT+P V RALP
Sbjct: 255 RRTSPAVASRALP 217
Score = 23.1 bits (44), Expect = 3.8
Identities = 8/12 (66%), Positives = 9/12 (74%)
Frame = +3 / +2
Query: 12 GRARSSTRGAVR 47
GRAR +T G VR
Sbjct: 218 GRAREATAGEVR 253
>MGMY004AE07F.B mgmy004aE07f.b LENGTH:472bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 472
Score = 23.1 bits (44), Expect = 3.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2 / -2
Query: 137 ARR*RTGLAGLDWIR 181
+RR*R LAG W+R
Sbjct: 165 SRR*RRRLAGCPWLR 121
>GI14180597 gi14180597 LENGTH:1073bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 1073
Score = 23.1 bits (44), Expect = 3.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1 / +3
Query: 207 MTKSQAHPSLIQSSPASPVRQRLAMP 130
+T S PS+IQ+S S V L+ P
Sbjct: 558 LTTSTHPPSIIQTSHLSAVLYSLSQP 635
>MGCS006DH04F.B mgcs006dH04f.b LENGTH:440bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 440
Score = 22.6 bits (43), Expect = 5.2
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +3 / +1
Query: 159 WLDWTGLGLDEP 194
W WTGLG P
Sbjct: 88 WTHWTGLGDTHP 123
>MGNS010CG10F.B mgns010cG10f.b LENGTH:386bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 386
Score = 22.6 bits (43), Expect = 5.2
Identities = 11/29 (37%), Positives = 13/29 (43%)
Frame = +2 / -2
Query: 83 CLMGHVERSKRASGYFGIARR*RTGLAGL 169
C+M R K ASGY R + GL
Sbjct: 295 CVMARPSRRKSASGYGACTSRSCLTVTGL 209
>CL150CT187CN512 cl150ct187cn512 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi14181312,gi339195
Length = 803
Score = 22.6 bits (43), Expect = 5.2
Identities = 7/29 (24%), Positives = 14/29 (48%)
Frame = +2 / +3
Query: 8 PWKSSLVYKRSSSPQHESVTVESLNCLMG 94
PW + +RS + + V+ C++G
Sbjct: 345 PWSAGPTKERSPQTFSDRIRVQRQGCMLG 431
>MGCS009AA04F.B mgcs009aA04f.b LENGTH:541bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 541
Score = 22.6 bits (43), Expect = 5.2
Identities = 12/28 (42%), Positives = 16/28 (56%)
Frame = +2 / -3
Query: 86 LMGHVERSKRASGYFGIARR*RTGLAGL 169
+MG +E KR +GY A R R L G+
Sbjct: 467 MMGMLEV*KRRTGYEPRAPRWREDLTGI 384
>CL685CT768CN1537 cl685ct768cn1537 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:9; ESTS:mgap007cF08f.b,mgn
Length = 875
Score = 22.6 bits (43), Expect = 5.2
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -1 / -3
Query: 222 PARSVMTKSQAHPSLIQSSPASPVRQRLAMPK 127
PAR ++H L+ SS R RLA K
Sbjct: 633 PARYTS*SMKSHLELVTSSEPPAHRSRLASEK 538
>CL106CT139CN421 cl106ct139cn421 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi14181392,gi339200
Length = 799
Score = 22.6 bits (43), Expect = 5.2
Identities = 11/24 (45%), Positives = 14/24 (57%)
Frame = +2 / -3
Query: 161 AGLDWIRLG*AWDFVMTERAGYLT 232
A +DW L * +D V+ RAG T
Sbjct: 125 ASVDWAMLE*KYDRVI*PRAGRKT 54
>MGCM008AD08F.B mgcm008aD08f.b LENGTH:361bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 361
Score = 22.6 bits (43), Expect = 5.2
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2 / +1
Query: 65 TVESLNCLMGHVERSK 112
T+ES L GH+ RS+
Sbjct: 115 TIESQGYLRGHIPRSR 162
>CL643CT723CN1488 cl643ct723cn1488 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:3; ESTS:gi2537285g,mgns012
Length = 613
Score = 22.6 bits (43), Expect = 5.2
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -3 / +1
Query: 118 RPFTSFNMTHETIQTLN 68
RPF F HET+ L+
Sbjct: 205 RPFVGFPGRHETVDRLD 255
>CL1213CT1316CN2106 cl1213ct1316cn2106 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgcm008dD02f.b,m
Length = 550
Score = 22.6 bits (43), Expect = 5.2
Identities = 6/10 (60%), Positives = 8/10 (80%)
Frame = +3 / -3
Query: 153 QDWLDWTGLG 182
+ WL W+GLG
Sbjct: 242 EPWLPWSGLG 213
>MGCS002DB06F.B mgcs002dB06f.b LENGTH:273bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 273
Score = 22.1 bits (42), Expect = 7.1
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -1 / -3
Query: 189 HPSLIQSSPAS 157
HPS I+SS AS
Sbjct: 115 HPSPIRSSVAS 83
>GI3391388G gi3391388g LENGTH:976bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 976
Score = 22.1 bits (42), Expect = 7.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -2 / +3
Query: 224 NPPAPS*QNPRLIQA*SSPVQPVLFVNA*QCQN 126
+P P+ +PRL Q P P L+ +CQ+
Sbjct: 456 DPQGPAHWSPRLQQEPGYPRHPALWRPDRRCQH 554
>CL207CT247CN633 cl207ct247cn633 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:5; ESTS:gi14181161,mgmy001c
Length = 860
Score = 22.1 bits (42), Expect = 7.1
Identities = 12/32 (37%), Positives = 17/32 (52%)
Frame = +3 / +1
Query: 48 RSTRASRLRV*IVSWVMLKEVKGRQGILALLG 143
RST +SRL +V L +G +G + LG
Sbjct: 652 RSTTSSRLAACHTQFVYLTGSRGSRGYVGGLG 747
>MGCS001DG05F.B mgcs001dG05f.b LENGTH:297bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 297
Score = 22.1 bits (42), Expect = 7.1
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2 / +3
Query: 71 ESLNCLMGHVERSKRASGYFGIARR*RTGLAGLDW 175
ES +C+M S+ S FGI+R A L +
Sbjct: 90 ESKDCMMPMGWTSENVSSDFGISREEMDKFAALSF 194
>MGCM002AG08F.B mgcm002aG08f.b LENGTH:538bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 538
Score = 22.1 bits (42), Expect = 7.1
Identities = 6/16 (37%), Positives = 11/16 (68%)
Frame = -3 / +2
Query: 226 ITRPLRHDKIPGSSKP 179
I + L+HD+ P ++P
Sbjct: 80 IIQKLQHDETPCENRP 127
>MGCM008DC06F.B mgcm008dC06f.b LENGTH:216bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 216
Score = 22.1 bits (42), Expect = 7.1
Identities = 6/13 (46%), Positives = 8/13 (61%)
Frame = -3 / -2
Query: 43 TAPLVDERALPWT 5
T L++ ALPW
Sbjct: 44 TVVLMEYEALPWL 6
>MGNS001BH12F.B mgns001bH12f.b LENGTH:434bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 434
Score = 22.1 bits (42), Expect = 7.1
Identities = 12/42 (28%), Positives = 19/42 (44%)
Frame = +3 / -2
Query: 27 STRGAVRRSTRASRLRV*IVSWVMLKEVKGRQGILALLGVDE 152
STR R S ++ + W K + GILA++ + E
Sbjct: 412 STRPLTRSSVSSTVMAASRSRWACSKTTAQKAGILAMVDLRE 287
>MGCS009CA02F.B mgcs009cA02f.b LENGTH:451bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 451
Score = 22.1 bits (42), Expect = 7.1
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1 / +3
Query: 189 HPSLIQSSPASPVRQRLA 136
H + SSPA PVR+ A
Sbjct: 255 HEAARSSSPAGPVRKSYA 308
>GI3391638G gi3391638g LENGTH:854bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 854
Score = 22.1 bits (42), Expect = 7.1
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3 / -1
Query: 15 RARSSTRGAVRRSTRA 62
RARS RGA RR +A
Sbjct: 440 RARSRPRGAWRRGGKA 393
>CL92CT125CN396 cl92ct125cn396 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:17; ESTS:gi14181415,gi141812
Length = 1013
Score = 22.1 bits (42), Expect = 7.1
Identities = 11/24 (45%), Positives = 12/24 (49%)
Frame = +3 / +2
Query: 3 HVHGRARSSTRGAVRRSTRASRLR 74
H H RA + RGA R R R R
Sbjct: 194 HPHHRAGARLRGAGRHVDRPDRGR 265
>MGCS008DH10F.B mgcs008dH10f.b LENGTH:306bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 306
Score = 22.1 bits (42), Expect = 7.1
Identities = 13/34 (38%), Positives = 17/34 (49%)
Frame = +3 / -2
Query: 123 GILALLGVDEQDWLDWTGLGLDEPGILS*RSGRV 224
G L LLG ++ GLG +E G +GRV
Sbjct: 218 GALDLLGDLAHPHVEALGLGAEEEGGFDHGAGRV 117
>CL298CT350CN808 cl298ct350cn808 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:7; ESTS:gi14180900,mgmy001a
Length = 1113
Score = 22.1 bits (42), Expect = 7.1
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +3 / +3
Query: 129 LALLGVDEQDWLDWTGL 179
L LL + WL W GL
Sbjct: 651 LRLLDIWHSVWLSWVGL 701
>MGCM001AB02F.B mgcm001aB02f.b LENGTH:374bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 374
Score = 22.1 bits (42), Expect = 7.1
Identities = 9/17 (52%), Positives = 11/17 (63%)
Frame = -1 / +3
Query: 204 TKSQAHPSLIQSSPASP 154
T+ Q PSL +PASP
Sbjct: 174 TRPQMDPSLCCMAPASP 224
>MGNS001DB09F.B mgns001dB09f.b LENGTH:333bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 333
Score = 22.1 bits (42), Expect = 7.1
Identities = 9/17 (52%), Positives = 12/17 (69%)
Frame = +3 / +1
Query: 15 RARSSTRGAVRRSTRAS 65
RAR+S+R RST +S
Sbjct: 163 RARASSRSTAARSTSSS 213
>MGCS009BE01F.B mgcs009bE01f.b LENGTH:439bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 439
Score = 21.7 bits (41), Expect = 9.8
Identities = 10/21 (47%), Positives = 12/21 (56%)
Frame = +1 / -1
Query: 34 EEQFAAARERHG*ESELSHGS 96
E Q AA+ RH * S S G+
Sbjct: 115 ESQGAASCYRHA*TSCCSPGT 53
>GI3391508G gi3391508g LENGTH:843bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 843
Score = 21.7 bits (41), Expect = 9.8
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = +2 / -3
Query: 5 CPWKSSLVYKRSS 43
CP+ + +V+KR S
Sbjct: 496 CPYAAKIVFKRQS 458
>CL606CT684CN1434 cl606ct684cn1434 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi3391574g,mgap007
Length = 1027
Score = 21.7 bits (41), Expect = 9.8
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1 / -2
Query: 60 LSCCGELLLL*TSEL 16
LS CG++L L*T+ L
Sbjct: 777 LSSCGKMLYL*TAVL 733
>CL934CT1033CN1813 cl934ct1033cn1813 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgmy006aB07f.b,mg
Length = 370
Score = 21.7 bits (41), Expect = 9.8
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +3 / +2
Query: 36 GAVRRSTRASRL 71
GA RRS R RL
Sbjct: 128 GAARRSARQPRL 163
>CL1206CT1309CN2099 cl1206ct1309cn2099 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgcm008bF01f.b,m
Length = 704
Score = 21.7 bits (41), Expect = 9.8
Identities = 7/22 (31%), Positives = 13/22 (58%)
Frame = -1 / +1
Query: 177 IQSSPASPVRQRLAMPKYPDAL 112
+ PAS Q + +P++PD +
Sbjct: 316 VPRGPASAP*QEVPLPRHPDRI 381
>MGCM007AC10F.B mgcm007aC10f.b LENGTH:284bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 284
Score = 21.7 bits (41), Expect = 9.8
Identities = 9/17 (52%), Positives = 11/17 (63%)
Frame = +3 / +1
Query: 15 RARSSTRGAVRRSTRAS 65
RAR G ++RSTR S
Sbjct: 205 RARRRRTGRLKRSTRTS 255
>MGCM003DE01F.B mgcm003dE01f.b LENGTH:457bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 457
Score = 21.7 bits (41), Expect = 9.8
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = -3 / -1
Query: 226 ITRPLRHDKIPG 191
++RPLRH ++ G
Sbjct: 397 LSRPLRHHRVAG 362
>CL95CT128CN401 cl95ct128cn401 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:3; ESTS:gi14181411,mgcm004dD
Length = 975
Score = 21.7 bits (41), Expect = 9.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -1 / +1
Query: 177 IQSSPASPVRQRLAMPKYPDALLLLST 97
+ +SPA PVR +L + P + L T
Sbjct: 184 LPTSPAYPVRYKLINTRTPTLPISLFT 264
>CL126CT161CN464 cl126ct161cn464 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:1; ESTS:mgcs011bB03f.b; LENG
Length = 545
Score = 21.7 bits (41), Expect = 9.8
Identities = 6/10 (60%), Positives = 8/10 (80%)
Frame = +1 / +1
Query: 190 SLGFCHDGAG 219
S+GFC+D G
Sbjct: 511 SIGFCYDSTG 540
>MGCM006AA06F.B mgcm006aA06f.b LENGTH:580bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 580
Score = 21.7 bits (41), Expect = 9.8
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = +1 / +3
Query: 154 RTGWTGLD*AWMSLGFCHDG 213
RTGW+G + + + C G
Sbjct: 138 RTGWSGAEHRQLGI*LCRAG 197
>GI3391522G gi3391522g LENGTH:957bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 957
Score = 21.7 bits (41), Expect = 9.8
Identities = 6/15 (40%), Positives = 10/15 (66%)
Frame = +3 / -1
Query: 84 VSWVMLKEVKGRQGI 128
+ W+ L EV +QG+
Sbjct: 378 IVWITLDEVDSKQGV 334
>CL1000CT1101CN1883 cl1000ct1101cn1883 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgcm005aC12f.b,m
Length = 483
Score = 21.7 bits (41), Expect = 9.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3 / -3
Query: 15 RARSSTRGAVRRSTR 59
R+RSS+RGA R R
Sbjct: 418 RSRSSSRGAAGRRRR 374
>MGMY001AD06F.B mgmy001aD06f.b LENGTH:542bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 542
Score = 21.7 bits (41), Expect = 9.8
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2 / -3
Query: 11 WKSSLVYKRSSSPQHESVTV 70
W + +KRS++P H S V
Sbjct: 483 WNVA*PWKRSTAPAHRSSPV 424
>CL126CT162CN465 cl126ct162cn465 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:32; ESTS:gi14181354,gi33920
Length = 882
Score = 21.7 bits (41), Expect = 9.8
Identities = 6/10 (60%), Positives = 8/10 (80%)
Frame = +1 / +2
Query: 190 SLGFCHDGAG 219
S+GFC+D G
Sbjct: 569 SIGFCYDSTG 598
>MGCM003AF12F.B mgcm003aF12f.b LENGTH:268bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 268
Score = 21.7 bits (41), Expect = 9.8
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +1 / -1
Query: 163 WTGLD*AWMSLGFCHDGAGGLSD 231
W+G W LGF A GL D
Sbjct: 139 WSGFKLNWELLGFVPTVALGLID 71
>GI2537267G gi2537267g LENGTH:494bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 494
Score = 21.7 bits (41), Expect = 9.8
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +2 / +2
Query: 8 PWKSSLVYKRSSSP 49
PW SSLV R + P
Sbjct: 59 PWTSSLVGPRRAKP 100
>MGCS006AC04F.B mgcs006aC04f.b LENGTH:497bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 497
Score = 21.7 bits (41), Expect = 9.8
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = -1 / +2
Query: 81 FRLSTVTLSCCGELLLL*TSELF 13
F LS SCC LL + LF
Sbjct: 80 FLLSLFASSCCFSLLSSFSFFLF 148
>MGCM008DE07F.B mgcm008dE07f.b LENGTH:515bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 515
Score = 21.7 bits (41), Expect = 9.8
Identities = 10/17 (58%), Positives = 11/17 (63%)
Frame = +3 / +1
Query: 18 ARSSTRGAVRRSTRASR 68
A S +R RRS RASR
Sbjct: 418 ATSKSRAQRRRSARASR 468
>CL661CT744CN1511 cl661ct744cn1511 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgap007aC08f.b,mga
Length = 536
Score = 21.7 bits (41), Expect = 9.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3 / -2
Query: 15 RARSSTRGAVRRSTRASRLRV* 80
RAR +GAV + RA R R+*
Sbjct: 373 RARHEDQGAV*QGHRAHRARL* 308
>CL65CT92CN321 cl65ct92cn321 COVERAGE:0.97; CRAWID: 2; TOTAL_ESTS:9;
ESTS:gi14181467,gi14180860
Length = 883
Score = 21.7 bits (41), Expect = 9.8
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +3 / +3
Query: 15 RARSSTRGAVRRSTRASRLR 74
RARSST A R +SR R
Sbjct: 321 RARSSTSRATSRRRTSSRPR 380
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
0.318 0.135 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1582772
Number of Sequences: 4717
Number of extensions: 17900
Number of successful extensions: 889
Number of sequences better than 10.0: 95
length of query: 82
length of database: 847,903
effective HSP length: 37
effective length of query: 44
effective length of database: 673,374
effective search space: 29628456
effective search space used: 29628456
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 41 (21.7 bits)