BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1607_G04_N07ZS5.seq
(331 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CL927CT1026CN1806 cl927ct1026cn1806 COVERAGE:0.99; CRAWID: 1; TO... 30 0.62
CL992CT1093CN1875 cl992ct1093cn1875 COVERAGE:0.99; CRAWID: 1; TO... 28 2.5
CL872CT970CN1745 cl872ct970cn1745 COVERAGE:1.0; CRAWID: 1; TOTAL... 28 2.5
CL1184CT1287CN2076 cl1184ct1287cn2076 COVERAGE:1.0; CRAWID: 1; T... 28 2.5
MGNS010CF08F.B mgns010cF08f.b LENGTH:389bp ; DIRECTION:0 ; CLONE... 26 9.7
MGNS007BF07F.B mgns007bF07f.b LENGTH:416bp ; DIRECTION:0 ; CLONE... 26 9.7
MGNS002CD05F.B mgns002cD05f.b LENGTH:441bp ; DIRECTION:0 ; CLONE... 26 9.7
MGMY005CE03F.B mgmy005cE03f.b LENGTH:407bp ; DIRECTION:0 ; CLONE... 26 9.7
MGCM008BE02F.B mgcm008bE02f.b LENGTH:254bp ; DIRECTION:0 ; CLONE... 26 9.7
GI3392095G gi3392095g LENGTH:746bp ; DIRECTION:0 ; CLONE: n/a ; ... 26 9.7
GI3392060G gi3392060g LENGTH:847bp ; DIRECTION:0 ; CLONE: n/a ; ... 26 9.7
GI3391749G gi3391749g LENGTH:764bp ; DIRECTION:0 ; CLONE: n/a ; ... 26 9.7
GI2537318G gi2537318g LENGTH:619bp ; DIRECTION:0 ; CLONE: n/a ; ... 26 9.7
GI2537291G gi2537291g LENGTH:530bp ; DIRECTION:0 ; CLONE: n/a ; ... 26 9.7
GI14181093 gi14181093 LENGTH:979bp ; DIRECTION:0 ; CLONE: n/a ; ... 26 9.7
CL70CT100CN355 cl70ct100cn355 COVERAGE:0.99; CRAWID: 1; TOTAL_ES... 26 9.7
CL522CT596CN1312 cl522ct596cn1312 COVERAGE:1.0; CRAWID: 2; TOTAL... 26 9.7
CL35CT41CN141 cl35ct41cn141 COVERAGE:1.0; CRAWID: 4; TOTAL_ESTS:... 26 9.7
CL183CT221CN594 cl183ct221cn594 COVERAGE:0.99; CRAWID: 1; TOTAL_... 26 9.7
CL1053CT1154CN1939 cl1053ct1154cn1939 COVERAGE:0.98; CRAWID: 1; ... 26 9.7
>CL927CT1026CN1806 cl927ct1026cn1806 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgmy005cD03f.b,mg
Length = 483
Score = 30.2 bits (15), Expect = 0.62
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 25 catcgccctgcccaa 39
|||||||||||||||
Sbjct: 182 catcgccctgcccaa 196
>CL992CT1093CN1875 cl992ct1093cn1875 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:5; ESTS:mgcm001cC05f.b,mg
Length = 583
Score = 28.2 bits (14), Expect = 2.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 205 ggagaacctccaaa 218
||||||||||||||
Sbjct: 284 ggagaacctccaaa 271
>CL872CT970CN1745 cl872ct970cn1745 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgmy003cC03f.b,mgns
Length = 339
Score = 28.2 bits (14), Expect = 2.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 164 agggaatgcctcaa 177
||||||||||||||
Sbjct: 39 agggaatgcctcaa 26
>CL1184CT1287CN2076 cl1184ct1287cn2076 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcm007aD02f.b,mg
Length = 413
Score = 28.2 bits (14), Expect = 2.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 280 agtcaaactcttcg 293
||||||||||||||
Sbjct: 29 agtcaaactcttcg 42
>MGNS010CF08F.B mgns010cF08f.b LENGTH:389bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 389
Score = 26.3 bits (13), Expect = 9.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 260 gcagccacagcga 272
|||||||||||||
Sbjct: 324 gcagccacagcga 336
>MGNS007BF07F.B mgns007bF07f.b LENGTH:416bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 416
Score = 26.3 bits (13), Expect = 9.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 91 aaatggctccagc 103
|||||||||||||
Sbjct: 276 aaatggctccagc 288
>MGNS002CD05F.B mgns002cD05f.b LENGTH:441bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 441
Score = 26.3 bits (13), Expect = 9.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 161 gaaagggaatgcc 173
|||||||||||||
Sbjct: 241 gaaagggaatgcc 229
>MGMY005CE03F.B mgmy005cE03f.b LENGTH:407bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 407
Score = 26.3 bits (13), Expect = 9.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 212 ctccaaaagcgca 224
|||||||||||||
Sbjct: 341 ctccaaaagcgca 329
>MGCM008BE02F.B mgcm008bE02f.b LENGTH:254bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 254
Score = 26.3 bits (13), Expect = 9.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 190 ttttgtaattctt 202
|||||||||||||
Sbjct: 132 ttttgtaattctt 144
>GI3392095G gi3392095g LENGTH:746bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 746
Score = 26.3 bits (13), Expect = 9.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 230 ctggtcattggta 242
|||||||||||||
Sbjct: 209 ctggtcattggta 197
>GI3392060G gi3392060g LENGTH:847bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 847
Score = 26.3 bits (13), Expect = 9.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 312 gaaggcgacaggt 324
|||||||||||||
Sbjct: 771 gaaggcgacaggt 759
>GI3391749G gi3391749g LENGTH:764bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 764
Score = 26.3 bits (13), Expect = 9.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 259 ggcagccacagcg 271
|||||||||||||
Sbjct: 354 ggcagccacagcg 342
>GI2537318G gi2537318g LENGTH:619bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 619
Score = 26.3 bits (13), Expect = 9.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 137 atcaccttgacat 149
|||||||||||||
Sbjct: 345 atcaccttgacat 357
>GI2537291G gi2537291g LENGTH:530bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 530
Score = 26.3 bits (13), Expect = 9.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 47 gacaatatgcttc 59
|||||||||||||
Sbjct: 31 gacaatatgcttc 43
>GI14181093 gi14181093 LENGTH:979bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 979
Score = 26.3 bits (13), Expect = 9.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 24 acatcgccctgcc 36
|||||||||||||
Sbjct: 791 acatcgccctgcc 803
>CL70CT100CN355 cl70ct100cn355 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi14181455,mgcs003bB
Length = 628
Score = 26.3 bits (13), Expect = 9.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 28 cgccctgcccaat 40
|||||||||||||
Sbjct: 412 cgccctgcccaat 400
>CL522CT596CN1312 cl522ct596cn1312 COVERAGE:1.0; CRAWID: 2;
TOTAL_ESTS:1; ESTS:gi3392029g; LENGTH:
Length = 804
Score = 26.3 bits (13), Expect = 9.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 110 gaatggtcgcttg 122
|||||||||||||
Sbjct: 577 gaatggtcgcttg 565
>CL35CT41CN141 cl35ct41cn141 COVERAGE:1.0; CRAWID: 4; TOTAL_ESTS:1;
ESTS:gi3391531g; LENGTH:102
Length = 1028
Score = 26.3 bits (13), Expect = 9.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 55 gcttcatgtcgga 67
|||||||||||||
Sbjct: 173 gcttcatgtcgga 161
>CL183CT221CN594 cl183ct221cn594 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:3; ESTS:gi14181223,gi339157
Length = 1333
Score = 26.3 bits (13), Expect = 9.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 282 tcaaactcttcga 294
|||||||||||||
Sbjct: 685 tcaaactcttcga 673
>CL1053CT1154CN1939 cl1053ct1154cn1939 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:4; ESTS:mgns007bF01f.b,m
Length = 470
Score = 26.3 bits (13), Expect = 9.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 135 ggatcaccttgac 147
|||||||||||||
Sbjct: 106 ggatcaccttgac 94
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 313
Number of Sequences: 4717
Number of extensions: 313
Number of successful extensions: 64
Number of sequences better than 10.0: 20
length of query: 331
length of database: 2,543,711
effective HSP length: 15
effective length of query: 316
effective length of database: 2,472,956
effective search space: 781454096
effective search space used: 781454096
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)