BLASTN 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1607_H04_P07ZS5.seq
         (110 letters)

Database: /phillip/Ncr/Mgr_IFAFSGB_nr
           4717 sequences; 2,543,711 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

MGCS009BG07F.B mgcs009bG07f.b LENGTH:171bp ; DIRECTION:0 ; CLONE...    28  0.76
GI14181257 gi14181257 LENGTH:840bp ; DIRECTION:0 ; CLONE: n/a ; ...    28  0.76
MGNS001BA12F.B mgns001bA12f.b LENGTH:531bp ; DIRECTION:0 ; CLONE...    26  3.0
GI14180553 gi14180553 LENGTH:860bp ; DIRECTION:0 ; CLONE: n/a ; ...    26  3.0
CL197CT237CN616 cl197ct237cn616 COVERAGE:0.96; CRAWID: 1; TOTAL_...    26  3.0

>MGCS009BG07F.B mgcs009bG07f.b LENGTH:171bp ; DIRECTION:0 ; CLONE:
          n/a ; CLONELIB: n/a ; TISSUE:
          Length = 171

 Score = 28.2 bits (14), Expect = 0.76
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                        
Query: 21 gttgtgaaggagat 34
          ||||||||||||||
Sbjct: 24 gttgtgaaggagat 37



>GI14181257 gi14181257 LENGTH:840bp ; DIRECTION:0 ; CLONE: n/a ;
           CLONELIB: n/a ; TISSUE:[]
          Length = 840

 Score = 28.2 bits (14), Expect = 0.76
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 81  acagaatagttata 94
           ||||||||||||||
Sbjct: 182 acagaatagttata 195



>MGNS001BA12F.B mgns001bA12f.b LENGTH:531bp ; DIRECTION:0 ; CLONE:
           n/a ; CLONELIB: n/a ; TISSUE:
          Length = 531

 Score = 26.3 bits (13), Expect = 3.0
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                        
Query: 12  gccattgtcgttg 24
           |||||||||||||
Sbjct: 336 gccattgtcgttg 324



>GI14180553 gi14180553 LENGTH:860bp ; DIRECTION:0 ; CLONE: n/a ;
           CLONELIB: n/a ; TISSUE:[]
          Length = 860

 Score = 26.3 bits (13), Expect = 3.0
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                        
Query: 5   acggttggccatt 17
           |||||||||||||
Sbjct: 485 acggttggccatt 473



>CL197CT237CN616 cl197ct237cn616 COVERAGE:0.96; CRAWID: 1;
           TOTAL_ESTS:2; ESTS:gi14181182,gi339153
          Length = 971

 Score = 26.3 bits (13), Expect = 3.0
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                        
Query: 85  aatagttataata 97
           |||||||||||||
Sbjct: 961 aatagttataata 949



  Database: /phillip/Ncr/Mgr_IFAFSGB_nr
    Posted date:  Mar 22, 2002  5:31 PM
  Number of letters in database: 2,543,711
  Number of sequences in database:  4717
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 91
Number of Sequences: 4717
Number of extensions: 91
Number of successful extensions: 91
Number of sequences better than 10.0: 5
length of query: 110
length of database: 2,543,711
effective HSP length: 13
effective length of query: 97
effective length of database: 2,482,390
effective search space: 240791830
effective search space used: 240791830
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)