TBLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1607_H04_P07ZS5.seq
(110 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CL605CT683CN1433 cl605ct683cn1433 COVERAGE:0.99; CRAWID: 1; TOTA... 24 0.24
CL267CT313CN744 cl267ct313cn744 COVERAGE:1.0; CRAWID: 2; TOTAL_E... 24 0.34
CL466CT538CN1205 cl466ct538cn1205 COVERAGE:0.95; CRAWID: 1; TOTA... 24 0.46
CL621CT699CN1452 cl621ct699cn1452 COVERAGE:0.97; CRAWID: 2; TOTA... 24 0.46
GI3391638G gi3391638g LENGTH:854bp ; DIRECTION:0 ; CLONE: n/a ; ... 23 0.87
MGAP007BE03F.B mgap007bE03f.b LENGTH:327bp ; DIRECTION:0 ; CLONE... 23 0.87
MGNS004DB03F.B mgns004dB03f.b LENGTH:152bp ; DIRECTION:0 ; CLONE... 23 0.87
MGCM008DC10F.B mgcm008dC10f.b LENGTH:244bp ; DIRECTION:0 ; CLONE... 23 0.87
MGMY006CG09F.B mgmy006cG09f.b LENGTH:94bp ; DIRECTION:0 ; CLONE:... 22 1.6
MGCM004AF09F.B mgcm004aF09f.b LENGTH:272bp ; DIRECTION:0 ; CLONE... 21 2.3
CL600CT677CN1427 cl600ct677cn1427 COVERAGE:1.0; CRAWID: 1; TOTAL... 21 2.3
CL5CT7CN16 cl5ct7cn16 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:3; ES... 21 2.3
CL1433CT1537CN2333 cl1433ct1537cn2333 COVERAGE:0.99; CRAWID: 1; ... 21 2.3
CL1005CT1106CN1889 cl1005ct1106cn1889 COVERAGE:1.0; CRAWID: 1; T... 21 2.3
MGCM012BH03F.B mgcm012bH03f.b LENGTH:439bp ; DIRECTION:0 ; CLONE... 21 3.1
CL18CT23CN79 cl18ct23cn79 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:6... 21 3.1
CL343CT402CN884 cl343ct402cn884 COVERAGE:0.97; CRAWID: 1; TOTAL_... 20 4.3
CL1157CT1260CN2049 cl1157ct1260cn2049 COVERAGE:0.96; CRAWID: 1; ... 20 4.3
MGNS011AE11F.B mgns011aE11f.b LENGTH:416bp ; DIRECTION:0 ; CLONE... 20 4.3
CL717CT802CN1573 cl717ct802cn1573 COVERAGE:0.99; CRAWID: 1; TOTA... 20 4.3
CL814CT905CN1679 cl814ct905cn1679 COVERAGE:0.97; CRAWID: 1; TOTA... 20 4.3
GI2537322G gi2537322g LENGTH:2750bp ; DIRECTION:0 ; CLONE: n/a ;... 20 4.3
MGNS009DH11F.B mgns009dH11f.b LENGTH:439bp ; DIRECTION:0 ; CLONE... 20 5.9
CL99CT132CN410 cl99ct132cn410 COVERAGE:0.99; CRAWID: 1; TOTAL_ES... 20 5.9
CL1307CT1410CN2201 cl1307ct1410cn2201 COVERAGE:0.99; CRAWID: 1; ... 20 5.9
MGNS011CA08F.B mgns011cA08f.b LENGTH:517bp ; DIRECTION:0 ; CLONE... 20 5.9
CL655CT737CN1504 cl655ct737cn1504 COVERAGE:0.99; CRAWID: 1; TOTA... 20 5.9
MGCS002DA09F.B mgcs002dA09f.b LENGTH:518bp ; DIRECTION:0 ; CLONE... 20 5.9
CL971CT1072CN1853 cl971ct1072cn1853 COVERAGE:0.99; CRAWID: 1; TO... 20 5.9
MGCS008BD02F.B mgcs008bD02f.b LENGTH:461bp ; DIRECTION:0 ; CLONE... 20 5.9
MGCM007BE08F.B mgcm007bE08f.b LENGTH:382bp ; DIRECTION:0 ; CLONE... 20 5.9
CL430CT499CN1128 cl430ct499cn1128 COVERAGE:1.0; CRAWID: 4; TOTAL... 20 5.9
CL938CT1037CN1817 cl938ct1037cn1817 COVERAGE:0.99; CRAWID: 1; TO... 20 5.9
GI2537292G gi2537292g LENGTH:547bp ; DIRECTION:0 ; CLONE: n/a ; ... 19 8.1
GI14180672 gi14180672 LENGTH:635bp ; DIRECTION:0 ; CLONE: n/a ; ... 19 8.1
CL23CT29CN108 cl23ct29cn108 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS... 19 8.1
MGCS004BG06F.B mgcs004bG06f.b LENGTH:446bp ; DIRECTION:0 ; CLONE... 19 8.1
MGCM003DA06F.B mgcm003dA06f.b LENGTH:429bp ; DIRECTION:0 ; CLONE... 19 8.1
CL406CT472CN1056 cl406ct472cn1056 COVERAGE:1.0; CRAWID: 8; TOTAL... 19 8.1
MGCM012CD02F.B mgcm012cD02f.b LENGTH:436bp ; DIRECTION:0 ; CLONE... 19 8.1
>CL605CT683CN1433 cl605ct683cn1433 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:10; ESTS:gi3391577g,mgap00
Length = 899
Score = 24.4 bits (47), Expect = 0.24
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +2 / +1
Query: 14 HCRCEGDIKLILRSYCISY*G 76
HCRC + L + S C + G
Sbjct: 517 HCRCTAHVTLHMSSLCNDFTG 579
>CL267CT313CN744 cl267ct313cn744 COVERAGE:1.0; CRAWID: 2;
TOTAL_ESTS:1; ESTS:gi14180429; LENGTH:7
Length = 782
Score = 24.0 bits (46), Expect = 0.34
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -3 / +2
Query: 48 SINLISPSQRQWP 10
S NLISP + QWP
Sbjct: 443 SNNLISPYRLQWP 481
>CL466CT538CN1205 cl466ct538cn1205 COVERAGE:0.95; CRAWID: 1;
TOTAL_ESTS:3; ESTS:gi3392365g,mgns001
Length = 893
Score = 23.5 bits (45), Expect = 0.46
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1 / -3
Query: 1 RYGWPLSL*RRYQIDTQELL 60
RYG PL L +DTQ+ L
Sbjct: 726 RYGAPLPLDNDLDLDTQDTL 667
>CL621CT699CN1452 cl621ct699cn1452 COVERAGE:0.97; CRAWID: 2;
TOTAL_ESTS:21; ESTS:gi3391406g,mgmy00
Length = 1156
Score = 23.5 bits (45), Expect = 0.46
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +2 / +2
Query: 41 LILRSYCISY 70
LILR YCI+Y
Sbjct: 1061 LILRGYCINY 1090
>GI3391638G gi3391638g LENGTH:854bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 854
Score = 22.6 bits (43), Expect = 0.87
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -3 / +3
Query: 33 SPSQRQWPT 7
SPS R+WPT
Sbjct: 120 SPSARRWPT 146
>MGAP007BE03F.B mgap007bE03f.b LENGTH:327bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 327
Score = 22.6 bits (43), Expect = 0.87
Identities = 7/13 (53%), Positives = 9/13 (68%)
Frame = +2 / +2
Query: 14 HCRCEGDIKLILR 52
HCRC + L+LR
Sbjct: 254 HCRCRSYLGLLLR 292
>MGNS004DB03F.B mgns004dB03f.b LENGTH:152bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 152
Score = 22.6 bits (43), Expect = 0.87
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +2 / -1
Query: 8 VGHCRCEGDIKLILRS 55
+G CRC+ D+K + S
Sbjct: 68 LGDCRCDEDLKDVAAS 21
>MGCM008DC10F.B mgcm008dC10f.b LENGTH:244bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 244
Score = 22.6 bits (43), Expect = 0.87
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +1 / -3
Query: 7 GWPLSL*RRYQIDTQELLH*LLRYLQ 84
GWPL + +R + EL H + +Q
Sbjct: 212 GWPLLIQQRLGVQPFELHHLVGNGIQ 135
>MGMY006CG09F.B mgmy006cG09f.b LENGTH:94bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:[
Length = 94
Score = 21.7 bits (41), Expect = 1.6
Identities = 9/22 (40%), Positives = 12/22 (53%)
Frame = -2 / +3
Query: 106 YFGYYNYSVGTLVANAVTPEYQ 41
YFG + + + ANA PE Q
Sbjct: 9 YFGAHTFRIKPEFANAKYPEGQ 74
>MGCM004AF09F.B mgcm004aF09f.b LENGTH:272bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 272
Score = 21.2 bits (40), Expect = 2.3
Identities = 5/10 (50%), Positives = 8/10 (80%)
Frame = -1 / -1
Query: 110 ALFWVL*LFC 81
++FWVL + C
Sbjct: 62 SMFWVLRIMC 33
>CL600CT677CN1427 cl600ct677cn1427 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi3391607g,mgns011b
Length = 1192
Score = 21.2 bits (40), Expect = 2.3
Identities = 5/8 (62%), Positives = 8/8 (99%)
Frame = +1 / +1
Query: 1 RYGWPLSL 24
+YGWP++L
Sbjct: 637 KYGWPIAL 660
>CL5CT7CN16 cl5ct7cn16 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:3;
ESTS:gi14181585,gi14181167,gi
Length = 1062
Score = 21.2 bits (40), Expect = 2.3
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = -1 / +2
Query: 107 LFWVL*LFCRYL 72
LFW++ + C YL
Sbjct: 623 LFWLIIILCLYL 658
>CL1433CT1537CN2333 cl1433ct1537cn2333 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcs005dA05f.b,m
Length = 942
Score = 21.2 bits (40), Expect = 2.3
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = +2 / -3
Query: 11 GHCRCEGDIKLILRSYCISY*GTYRI 88
G CR GD ++ C+S+ +R+
Sbjct: 562 GRCR*RGDWFVMAMVACVSHKWVWRV 485
>CL1005CT1106CN1889 cl1005ct1106cn1889 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcm001dC05f.b,mg
Length = 382
Score = 21.2 bits (40), Expect = 2.3
Identities = 6/8 (75%), Positives = 8/8 (100%)
Frame = -3 / +1
Query: 33 SPSQRQWP 10
SPS+R+WP
Sbjct: 115 SPSRRRWP 138
>MGCM012BH03F.B mgcm012bH03f.b LENGTH:439bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 439
Score = 20.8 bits (39), Expect = 3.1
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = -3 / +1
Query: 27 SQRQWPTVT 1
+QRQWP T
Sbjct: 139 TQRQWPRTT 165
>CL18CT23CN79 cl18ct23cn79 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:6;
ESTS:mgmy001bC11f.b,mgmy001
Length = 547
Score = 20.8 bits (39), Expect = 3.1
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = -2 / -2
Query: 46 YQFDISFTTTMA 11
YQ++ +FTTT+A
Sbjct: 273 YQWEGNFTTTLA 238
>CL343CT402CN884 cl343ct402cn884 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:15; ESTS:gi14180739,gi14180
Length = 1575
Score = 20.3 bits (38), Expect = 4.3
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = +2 / -1
Query: 5 TVGHCRCEGDIKLILRS 55
T+GHC C + + RS
Sbjct: 1422 TLGHCYCXDRQQSLARS 1372
>CL1157CT1260CN2049 cl1157ct1260cn2049 COVERAGE:0.96; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgcm006aA03f.b,m
Length = 423
Score = 20.3 bits (38), Expect = 4.3
Identities = 6/9 (66%), Positives = 9/9 (99%)
Frame = -1 / +2
Query: 35 YLLHNDNGQ 9
YLLH+D+G+
Sbjct: 386 YLLHHDSGR 412
>MGNS011AE11F.B mgns011aE11f.b LENGTH:416bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 416
Score = 20.3 bits (38), Expect = 4.3
Identities = 8/15 (53%), Positives = 9/15 (59%)
Frame = -3 / +2
Query: 51 LSINLISPSQRQWPT 7
LS +SPS R W T
Sbjct: 116 LSGTSLSPSSRPWST 160
>CL717CT802CN1573 cl717ct802cn1573 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgap010dE01f.b,mgc
Length = 482
Score = 20.3 bits (38), Expect = 4.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2 / +3
Query: 85 SVGTLVANAVTPEYQFDISFT 23
++ TLVA P YQ + +FT
Sbjct: 156 AMDTLVARYSRPAYQQNETFT 218
>CL814CT905CN1679 cl814ct905cn1679 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:7; ESTS:mgmy002bC08f.b,mgm
Length = 833
Score = 20.3 bits (38), Expect = 4.3
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = -3 / +2
Query: 33 SPSQRQWPT 7
SPS+ WPT
Sbjct: 263 SPSREPWPT 289
>GI2537322G gi2537322g LENGTH:2750bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 2750
Score = 20.3 bits (38), Expect = 4.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +2 / -1
Query: 23 CEGDIKLILRSYCISY 70
C+G + LRSY SY
Sbjct: 200 CQGILGTRLRSYISSY 153
>MGNS009DH11F.B mgns009dH11f.b LENGTH:439bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 439
Score = 19.8 bits (37), Expect = 5.9
Identities = 5/13 (38%), Positives = 11/13 (84%)
Frame = -3 / -1
Query: 54 LLSINLISPSQRQ 16
+L+ +L SPS+++
Sbjct: 202 ILTSSLDSPSRQE 164
>CL99CT132CN410 cl99ct132cn410 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi14181404,mgcm005bE
Length = 956
Score = 19.8 bits (37), Expect = 5.9
Identities = 5/6 (83%), Positives = 5/6 (83%)
Frame = +2 / +1
Query: 14 HCRCEG 31
HCRC G
Sbjct: 643 HCRCRG 660
>CL1307CT1410CN2201 cl1307ct1410cn2201 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns002cD04f.b,m
Length = 561
Score = 19.8 bits (37), Expect = 5.9
Identities = 6/8 (75%), Positives = 6/8 (75%)
Frame = +2 / -2
Query: 11 GHCRCEGD 34
GH RC GD
Sbjct: 134 GHVRCVGD 111
>MGNS011CA08F.B mgns011cA08f.b LENGTH:517bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 517
Score = 19.8 bits (37), Expect = 5.9
Identities = 6/12 (50%), Positives = 8/12 (66%)
Frame = +1 / +1
Query: 1 RYGWPLSL*RRY 36
R GWPL +R+
Sbjct: 154 RSGWPLGGCQRF 189
>CL655CT737CN1504 cl655ct737cn1504 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:4; ESTS:gi2537249g,mgap008
Length = 2004
Score = 19.8 bits (37), Expect = 5.9
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1 / -1
Query: 37 QIDTQELLH*LLRYLQN 87
++DT ELLH L +N
Sbjct: 1062 KVDTSELLHHLHTNAEN 1012
>MGCS002DA09F.B mgcs002dA09f.b LENGTH:518bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 518
Score = 19.8 bits (37), Expect = 5.9
Identities = 6/20 (30%), Positives = 11/20 (55%)
Frame = +2 / +2
Query: 8 VGHCRCEGDIKLILRSYCIS 67
+GH RC + + ++C S
Sbjct: 425 LGHLRCGIGVSDLFATFCTS 484
>CL971CT1072CN1853 cl971ct1072cn1853 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgcm001bC06f.b,mg
Length = 622
Score = 19.8 bits (37), Expect = 5.9
Identities = 8/19 (42%), Positives = 9/19 (47%)
Frame = +2 / +1
Query: 2 VTVGHCRCEGDIKLILRSY 58
V HC D+ ILR Y
Sbjct: 178 VQPSHCLIHTDLCCILREY 234
>MGCS008BD02F.B mgcs008bD02f.b LENGTH:461bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 461
Score = 19.8 bits (37), Expect = 5.9
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = -3 / +2
Query: 39 LISPSQRQWPT 7
L SPS WPT
Sbjct: 164 LRSPSSATWPT 196
>MGCM007BE08F.B mgcm007bE08f.b LENGTH:382bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 382
Score = 19.8 bits (37), Expect = 5.9
Identities = 4/4 (100%), Positives = 4/4 (100%)
Frame = +2 / -2
Query: 11 GHCR 22
GHCR
Sbjct: 249 GHCR 238
>CL430CT499CN1128 cl430ct499cn1128 COVERAGE:1.0; CRAWID: 4;
TOTAL_ESTS:1; ESTS:gi3391582g; LENGTH:
Length = 901
Score = 19.8 bits (37), Expect = 5.9
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = -2 / +3
Query: 94 YNYSVGTLVANAVTPEY 44
Y Y T++ N TPE+
Sbjct: 141 YRYI*DTILTNYYTPEH 191
>CL938CT1037CN1817 cl938ct1037cn1817 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:5; ESTS:mgmy006aG01f.b,mg
Length = 648
Score = 19.8 bits (37), Expect = 5.9
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = -3 / +1
Query: 33 SPSQRQWP 10
SP+Q QWP
Sbjct: 76 SPTQIQWP 99
>GI2537292G gi2537292g LENGTH:547bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 547
Score = 19.4 bits (36), Expect = 8.1
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +2 / -1
Query: 35 IKLILRSYCISY*GTYR 85
I+ +LRSY + Y Y+
Sbjct: 505 IEELLRSYQLRYFQVYK 455
>GI14180672 gi14180672 LENGTH:635bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 635
Score = 19.4 bits (36), Expect = 8.1
Identities = 6/12 (50%), Positives = 8/12 (66%)
Frame = +3 / -2
Query: 45 YSGVTALATKVP 80
YSG AL + +P
Sbjct: 304 YSGTFALFSTIP 269
>CL23CT29CN108 cl23ct29cn108 COVERAGE:0.99; CRAWID: 1; TOTAL_ESTS:2;
ESTS:gi14181557,gi3391478g
Length = 1268
Score = 19.4 bits (36), Expect = 8.1
Identities = 7/16 (43%), Positives = 10/16 (61%)
Frame = +2 / -3
Query: 5 TVGHCRCEGDIKLILR 52
T GH C G + L+L+
Sbjct: 585 TSGHTLCVGLLGLVLK 538
>MGCS004BG06F.B mgcs004bG06f.b LENGTH:446bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 446
Score = 19.4 bits (36), Expect = 8.1
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -1 / -1
Query: 107 LFWVL*LFCRYL 72
LFW *LFC L
Sbjct: 284 LFWGE*LFCDLL 249
>MGCM003DA06F.B mgcm003dA06f.b LENGTH:429bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 429
Score = 19.4 bits (36), Expect = 8.1
Identities = 6/19 (31%), Positives = 12/19 (62%)
Frame = +2 / -3
Query: 11 GHCRCEGDIKLILRSYCIS 67
G C C+ L++ S+C++
Sbjct: 280 GGCPCKIRTWLVVLSFCLA 224
>CL406CT472CN1056 cl406ct472cn1056 COVERAGE:1.0; CRAWID: 8;
TOTAL_ESTS:1; ESTS:gi3392379g; LENGTH:
Length = 818
Score = 19.4 bits (36), Expect = 8.1
Identities = 6/10 (60%), Positives = 8/10 (80%)
Frame = +3 / -2
Query: 51 GVTALATKVP 80
G+T +TKVP
Sbjct: 805 GITGFSTKVP 776
>MGCM012CD02F.B mgcm012cD02f.b LENGTH:436bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 436
Score = 19.4 bits (36), Expect = 8.1
Identities = 6/14 (42%), Positives = 8/14 (56%)
Frame = -3 / -1
Query: 51 LSINLISPSQRQWP 10
L +N + SQR W
Sbjct: 136 LGLNFMILSQRTWA 95
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
0.318 0.135 0.401
Matrix: BLOSUM62
Number of Hits to DB: 534990
Number of Sequences: 4717
Number of extensions: 2476
Number of successful extensions: 350
Number of sequences better than 10.0: 57
length of query: 36
length of database: 847,903
effective HSP length: 29
effective length of query: 7
effective length of database: 711,110
effective search space: 4977770
effective search space used: 4977770
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 35 (18.9 bits)