BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1607_H10_P19ZS5.seq
(338 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGCS005BC08F.B mgcs005bC08f.b LENGTH:476bp ; DIRECTION:0 ; CLONE... 30 0.64
GI14180594 gi14180594 LENGTH:627bp ; DIRECTION:0 ; CLONE: n/a ; ... 30 0.64
MGCM001BA12F.B mgcm001bA12f.b LENGTH:458bp ; DIRECTION:0 ; CLONE... 28 2.5
CL364CT427CN947 cl364ct427cn947 COVERAGE:0.99; CRAWID: 1; TOTAL_... 28 2.5
CL187CT225CN598 cl187ct225cn598 COVERAGE:1.0; CRAWID: 1; TOTAL_E... 28 2.5
CL1382CT1485CN2280 cl1382ct1485cn2280 COVERAGE:0.99; CRAWID: 1; ... 28 2.5
MGMY006CF10F.B mgmy006cF10f.b LENGTH:124bp ; DIRECTION:0 ; CLONE... 26 9.9
MGMY004DG05F.B mgmy004dG05f.b LENGTH:110bp ; DIRECTION:0 ; CLONE... 26 9.9
MGCS010AG08F.B mgcs010aG08f.b LENGTH:536bp ; DIRECTION:0 ; CLONE... 26 9.9
MGCM005AD07F.B mgcm005aD07f.b LENGTH:418bp ; DIRECTION:0 ; CLONE... 26 9.9
MGCM003DD09F.B mgcm003dD09f.b LENGTH:437bp ; DIRECTION:0 ; CLONE... 26 9.9
GI14181273 gi14181273 LENGTH:659bp ; DIRECTION:0 ; CLONE: n/a ; ... 26 9.9
GI14181219 gi14181219 LENGTH:980bp ; DIRECTION:0 ; CLONE: n/a ; ... 26 9.9
CL724CT809CN1580 cl724ct809cn1580 COVERAGE:0.99; CRAWID: 1; TOTA... 26 9.9
CL705CT789CN1559 cl705ct789cn1559 COVERAGE:0.97; CRAWID: 1; TOTA... 26 9.9
CL631CT709CN1466 cl631ct709cn1466 COVERAGE:0.99; CRAWID: 2; TOTA... 26 9.9
CL312CT366CN837 cl312ct366cn837 COVERAGE:0.99; CRAWID: 1; TOTAL_... 26 9.9
CL181CT219CN572 cl181ct219cn572 COVERAGE:0.95; CRAWID: 1; TOTAL_... 26 9.9
CL181CT218CN571 cl181ct218cn571 COVERAGE:1.0; CRAWID: 1; TOTAL_E... 26 9.9
CL1112CT1215CN2002 cl1112ct1215cn2002 COVERAGE:1.0; CRAWID: 1; T... 26 9.9
>MGCS005BC08F.B mgcs005bC08f.b LENGTH:476bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 476
Score = 30.2 bits (15), Expect = 0.64
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 118 ccgctgctcgaacga 132
|||||||||||||||
Sbjct: 344 ccgctgctcgaacga 358
>GI14180594 gi14180594 LENGTH:627bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 627
Score = 30.2 bits (15), Expect = 0.64
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 107 aacactcaccaccgctgct 125
|||| ||||||||||||||
Sbjct: 332 aacaatcaccaccgctgct 350
>MGCM001BA12F.B mgcm001bA12f.b LENGTH:458bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 458
Score = 28.2 bits (14), Expect = 2.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 212 gagagaagtcatga 225
||||||||||||||
Sbjct: 105 gagagaagtcatga 92
>CL364CT427CN947 cl364ct427cn947 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:4; ESTS:gi14180665,mgap008d
Length = 892
Score = 28.2 bits (14), Expect = 2.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 191 ggttatcaagaagg 204
||||||||||||||
Sbjct: 784 ggttatcaagaagg 797
>CL187CT225CN598 cl187ct225cn598 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgns007aD12f.b,mgns0
Length = 524
Score = 28.2 bits (14), Expect = 2.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 189 tcggttatcaagaa 202
||||||||||||||
Sbjct: 137 tcggttatcaagaa 150
>CL1382CT1485CN2280 cl1382ct1485cn2280 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:4; ESTS:mgcs002aB04f.b,m
Length = 750
Score = 28.2 bits (14), Expect = 2.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 147 cttcctcacttggg 160
||||||||||||||
Sbjct: 249 cttcctcacttggg 236
>MGMY006CF10F.B mgmy006cF10f.b LENGTH:124bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 124
Score = 26.3 bits (13), Expect = 9.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 238 agcataccgttga 250
|||||||||||||
Sbjct: 25 agcataccgttga 37
>MGMY004DG05F.B mgmy004dG05f.b LENGTH:110bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 110
Score = 26.3 bits (13), Expect = 9.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 108 acactcaccaccg 120
|||||||||||||
Sbjct: 18 acactcaccaccg 30
>MGCS010AG08F.B mgcs010aG08f.b LENGTH:536bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 536
Score = 26.3 bits (13), Expect = 9.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 225 atgggacctttca 237
|||||||||||||
Sbjct: 523 atgggacctttca 535
>MGCM005AD07F.B mgcm005aD07f.b LENGTH:418bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 418
Score = 26.3 bits (13), Expect = 9.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 113 caccaccgctgct 125
|||||||||||||
Sbjct: 25 caccaccgctgct 13
>MGCM003DD09F.B mgcm003dD09f.b LENGTH:437bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 437
Score = 26.3 bits (13), Expect = 9.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 252 gacggcctggagg 264
|||||||||||||
Sbjct: 112 gacggcctggagg 100
>GI14181273 gi14181273 LENGTH:659bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 659
Score = 26.3 bits (13), Expect = 9.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 221 catgatgggacct 233
|||||||||||||
Sbjct: 52 catgatgggacct 64
>GI14181219 gi14181219 LENGTH:980bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 980
Score = 26.3 bits (13), Expect = 9.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 38 tgtactcatttcg 50
|||||||||||||
Sbjct: 705 tgtactcatttcg 693
>CL724CT809CN1580 cl724ct809cn1580 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:6; ESTS:mgmy001aB05f.b,mgm
Length = 983
Score = 26.3 bits (13), Expect = 9.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 177 gtctggcgggagt 189
|||||||||||||
Sbjct: 114 gtctggcgggagt 102
>CL705CT789CN1559 cl705ct789cn1559 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgap008dH08f.b,mgc
Length = 711
Score = 26.3 bits (13), Expect = 9.9
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 248 tgacgacggcctggagg 264
||||| |||||||||||
Sbjct: 618 tgacggcggcctggagg 634
>CL631CT709CN1466 cl631ct709cn1466 COVERAGE:0.99; CRAWID: 2;
TOTAL_ESTS:8; ESTS:gi2537319g,mgmy001
Length = 825
Score = 26.3 bits (13), Expect = 9.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 173 atatgtctggcgg 185
|||||||||||||
Sbjct: 162 atatgtctggcgg 150
>CL312CT366CN837 cl312ct366cn837 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi14180844,mgcm008c
Length = 900
Score = 26.3 bits (13), Expect = 9.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 12 gaagtactggatg 24
|||||||||||||
Sbjct: 746 gaagtactggatg 734
>CL181CT219CN572 cl181ct219cn572 COVERAGE:0.95; CRAWID: 1;
TOTAL_ESTS:4; ESTS:gi14181231,gi141805
Length = 1585
Score = 26.3 bits (13), Expect = 9.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 245 cgttgacgacggc 257
|||||||||||||
Sbjct: 619 cgttgacgacggc 607
>CL181CT218CN571 cl181ct218cn571 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:1; ESTS:gi14180411; LENGTH:7
Length = 706
Score = 26.3 bits (13), Expect = 9.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 245 cgttgacgacggc 257
|||||||||||||
Sbjct: 197 cgttgacgacggc 185
>CL1112CT1215CN2002 cl1112ct1215cn2002 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcm004cB01f.b,mg
Length = 395
Score = 26.3 bits (13), Expect = 9.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 177 gtctggcgggagt 189
|||||||||||||
Sbjct: 17 gtctggcgggagt 5
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 342
Number of Sequences: 4717
Number of extensions: 342
Number of successful extensions: 92
Number of sequences better than 10.0: 21
length of query: 338
length of database: 2,543,711
effective HSP length: 15
effective length of query: 323
effective length of database: 2,472,956
effective search space: 798764788
effective search space used: 798764788
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)