BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1608_C10_F20ZS5.seq
(557 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MGCM002DD12F.B mgcm002dD12f.b LENGTH:374bp ; DIRECTION:0 ; CLONE... 34 0.068
MGCS006AB04F.B mgcs006aB04f.b LENGTH:498bp ; DIRECTION:0 ; CLONE... 32 0.27
CL253CT299CN718 cl253ct299cn718 COVERAGE:0.99; CRAWID: 1; TOTAL_... 32 0.27
MGCS002BD06F.B mgcs002bD06f.b LENGTH:508bp ; DIRECTION:0 ; CLONE... 28 4.2
MGCM001AE04F.B mgcm001aE04f.b LENGTH:441bp ; DIRECTION:0 ; CLONE... 28 4.2
GI3391898G gi3391898g LENGTH:742bp ; DIRECTION:0 ; CLONE: n/a ; ... 28 4.2
CL94CT127CN399 cl94ct127cn399 COVERAGE:0.99; CRAWID: 2; TOTAL_ES... 28 4.2
CL681CT764CN1533 cl681ct764cn1533 COVERAGE:0.99; CRAWID: 1; TOTA... 28 4.2
CL557CT631CN1365 cl557ct631cn1365 COVERAGE:1.0; CRAWID: 2; TOTAL... 28 4.2
CL534CT608CN1331 cl534ct608cn1331 COVERAGE:0.97; CRAWID: 1; TOTA... 28 4.2
CL519CT593CN1309 cl519ct593cn1309 COVERAGE:0.99; CRAWID: 1; TOTA... 28 4.2
CL450CT520CN1173 cl450ct520cn1173 COVERAGE:0.96; CRAWID: 1; TOTA... 28 4.2
CL442CT512CN1160 cl442ct512cn1160 COVERAGE:1.0; CRAWID: 2; TOTAL... 28 4.2
CL11CT16CN51 cl11ct16cn51 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:4... 28 4.2
CL1096CT1199CN1986 cl1096ct1199cn1986 COVERAGE:0.99; CRAWID: 1; ... 28 4.2
>MGCM002DD12F.B mgcm002dD12f.b LENGTH:374bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 374
Score = 34.2 bits (17), Expect = 0.068
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 12 ggcaaagaaggccgagg 28
|||||||||||||||||
Sbjct: 267 ggcaaagaaggccgagg 283
>MGCS006AB04F.B mgcs006aB04f.b LENGTH:498bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 498
Score = 32.2 bits (16), Expect = 0.27
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 73 aagcaaaaggccaggg 88
||||||||||||||||
Sbjct: 203 aagcaaaaggccaggg 218
>CL253CT299CN718 cl253ct299cn718 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:3; ESTS:gi3392072g,mgap008d
Length = 1290
Score = 32.2 bits (16), Expect = 0.27
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 115 gccattgacgacggcg 130
||||||||||||||||
Sbjct: 918 gccattgacgacggcg 933
>MGCS002BD06F.B mgcs002bD06f.b LENGTH:508bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 508
Score = 28.2 bits (14), Expect = 4.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 109 gaagaagccattga 122
||||||||||||||
Sbjct: 255 gaagaagccattga 242
>MGCM001AE04F.B mgcm001aE04f.b LENGTH:441bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 441
Score = 28.2 bits (14), Expect = 4.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 377 ttggtggtgcagct 390
||||||||||||||
Sbjct: 110 ttggtggtgcagct 97
>GI3391898G gi3391898g LENGTH:742bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 742
Score = 28.2 bits (14), Expect = 4.2
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 239 agaggggtcgaagaaagc 256
||||||||||||| ||||
Sbjct: 7 agaggggtcgaagcaagc 24
>CL94CT127CN399 cl94ct127cn399 COVERAGE:0.99; CRAWID: 2;
TOTAL_ESTS:10; ESTS:gi14181412,gi141813
Length = 1207
Score = 28.2 bits (14), Expect = 4.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 14 caaagaaggccgag 27
||||||||||||||
Sbjct: 79 caaagaaggccgag 66
>CL681CT764CN1533 cl681ct764cn1533 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:5; ESTS:mgap007cB06f.b,mgc
Length = 531
Score = 28.2 bits (14), Expect = 4.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 334 gagaaagaccatga 347
||||||||||||||
Sbjct: 497 gagaaagaccatga 510
>CL557CT631CN1365 cl557ct631cn1365 COVERAGE:1.0; CRAWID: 2;
TOTAL_ESTS:1; ESTS:gi3391601g; LENGTH:
Length = 1062
Score = 28.2 bits (14), Expect = 4.2
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 404 ataccaaccacagtgcca 421
|||| |||||||||||||
Sbjct: 1005 atacaaaccacagtgcca 988
>CL534CT608CN1331 cl534ct608cn1331 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:3; ESTS:gi3391941g,mgmy004
Length = 776
Score = 28.2 bits (14), Expect = 4.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 432 caaccgggcaacaa 445
||||||||||||||
Sbjct: 252 caaccgggcaacaa 265
>CL519CT593CN1309 cl519ct593cn1309 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi3392039g,mgns007
Length = 885
Score = 28.2 bits (14), Expect = 4.2
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 6 gcacaaggcaaagaaggc 23
||||||||||||| ||||
Sbjct: 252 gcacaaggcaaaggaggc 269
>CL450CT520CN1173 cl450ct520cn1173 COVERAGE:0.96; CRAWID: 1;
TOTAL_ESTS:3; ESTS:gi14180135,gi14180
Length = 819
Score = 28.2 bits (14), Expect = 4.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 206 cagcagctatcgac 219
||||||||||||||
Sbjct: 312 cagcagctatcgac 299
>CL442CT512CN1160 cl442ct512cn1160 COVERAGE:1.0; CRAWID: 2;
TOTAL_ESTS:1; ESTS:gi14180293; LENGTH:
Length = 774
Score = 28.2 bits (14), Expect = 4.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 422 caagtctcgacaac 435
||||||||||||||
Sbjct: 354 caagtctcgacaac 367
>CL11CT16CN51 cl11ct16cn51 COVERAGE:0.98; CRAWID: 1; TOTAL_ESTS:44;
ESTS:gi14181577,gi14181405
Length = 1188
Score = 28.2 bits (14), Expect = 4.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 402 tgataccaaccaca 415
||||||||||||||
Sbjct: 1073 tgataccaaccaca 1060
>CL1096CT1199CN1986 cl1096ct1199cn1986 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:5; ESTS:mgcm004aF10f.b,m
Length = 702
Score = 28.2 bits (14), Expect = 4.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 271 tcaccaacctccaa 284
||||||||||||||
Sbjct: 189 tcaccaacctccaa 202
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 807
Number of Sequences: 4717
Number of extensions: 807
Number of successful extensions: 225
Number of sequences better than 10.0: 15
length of query: 557
length of database: 2,543,711
effective HSP length: 15
effective length of query: 542
effective length of database: 2,472,956
effective search space: 1340342152
effective search space used: 1340342152
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)