BLASTN 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1608_F08_L16ZS5.seq
(260 letters)
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
4717 sequences; 2,543,711 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CL20CT26CN84 cl20ct26cn84 COVERAGE:0.97; CRAWID: 1; TOTAL_ESTS:2... 34 0.031
MGCM009AC04F.B mgcm009aC04f.b LENGTH:322bp ; DIRECTION:0 ; CLONE... 28 1.9
CL578CT652CN1396 cl578ct652cn1396 COVERAGE:0.98; CRAWID: 1; TOTA... 28 1.9
MGNS011AH11F.B mgns011aH11f.b LENGTH:451bp ; DIRECTION:0 ; CLONE... 26 7.6
MGCS006BD10F.B mgcs006bD10f.b LENGTH:212bp ; DIRECTION:0 ; CLONE... 26 7.6
MGCS006AG11F.B mgcs006aG11f.b LENGTH:512bp ; DIRECTION:0 ; CLONE... 26 7.6
MGCS002DB02F.B mgcs002dB02f.b LENGTH:422bp ; DIRECTION:0 ; CLONE... 26 7.6
MGCM009DG12F.B mgcm009dG12f.b LENGTH:173bp ; DIRECTION:0 ; CLONE... 26 7.6
MGCM008DD01F.B mgcm008dD01f.b LENGTH:481bp ; DIRECTION:0 ; CLONE... 26 7.6
MGCM004AF11F.B mgcm004aF11f.b LENGTH:272bp ; DIRECTION:0 ; CLONE... 26 7.6
MGAP007CF02F.B mgap007cF02f.b LENGTH:532bp ; DIRECTION:0 ; CLONE... 26 7.6
MGAP007BE06F.B mgap007bE06f.b LENGTH:455bp ; DIRECTION:0 ; CLONE... 26 7.6
GI3391850G gi3391850g LENGTH:748bp ; DIRECTION:0 ; CLONE: n/a ; ... 26 7.6
GI3391843G gi3391843g LENGTH:713bp ; DIRECTION:0 ; CLONE: n/a ; ... 26 7.6
GI3391801G gi3391801g LENGTH:889bp ; DIRECTION:0 ; CLONE: n/a ; ... 26 7.6
CL83CT116CN383 cl83ct116cn383 COVERAGE:1.0; CRAWID: 1; TOTAL_EST... 26 7.6
CL630CT708CN1465 cl630ct708cn1465 COVERAGE:0.98; CRAWID: 1; TOTA... 26 7.6
CL617CT695CN1448 cl617ct695cn1448 COVERAGE:0.99; CRAWID: 1; TOTA... 26 7.6
CL433CT502CN1136 cl433ct502cn1136 COVERAGE:0.96; CRAWID: 1; TOTA... 26 7.6
CL363CT426CN945 cl363ct426cn945 COVERAGE:1.0; CRAWID: 1; TOTAL_E... 26 7.6
CL334CT393CN873 cl334ct393cn873 COVERAGE:0.97; CRAWID: 1; TOTAL_... 26 7.6
CL310CT364CN835 cl310ct364cn835 COVERAGE:0.99; CRAWID: 1; TOTAL_... 26 7.6
CL177CT214CN557 cl177ct214cn557 COVERAGE:0.98; CRAWID: 1; TOTAL_... 26 7.6
CL1040CT1141CN1924 cl1040ct1141cn1924 COVERAGE:0.99; CRAWID: 1; ... 26 7.6
>CL20CT26CN84 cl20ct26cn84 COVERAGE:0.97; CRAWID: 1; TOTAL_ESTS:26;
ESTS:gi14181560,gi14181292
Length = 1300
Score = 34.2 bits (17), Expect = 0.031
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 220 gaccctagatcagtcaaaatg 240
||||||| |||||||||||||
Sbjct: 170 gaccctaaatcagtcaaaatg 190
>MGCM009AC04F.B mgcm009aC04f.b LENGTH:322bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 322
Score = 28.2 bits (14), Expect = 1.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 68 cgggattcggagag 81
||||||||||||||
Sbjct: 153 cgggattcggagag 166
>CL578CT652CN1396 cl578ct652cn1396 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:16; ESTS:gi3391728g,mgmy00
Length = 1203
Score = 28.2 bits (14), Expect = 1.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 228 atcagtcaaaatgg 241
||||||||||||||
Sbjct: 52 atcagtcaaaatgg 65
>MGNS011AH11F.B mgns011aH11f.b LENGTH:451bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 451
Score = 26.3 bits (13), Expect = 7.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 55 ccgggttggggtt 67
|||||||||||||
Sbjct: 351 ccgggttggggtt 339
>MGCS006BD10F.B mgcs006bD10f.b LENGTH:212bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 212
Score = 26.3 bits (13), Expect = 7.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 50 cgcccccgggttg 62
|||||||||||||
Sbjct: 161 cgcccccgggttg 173
>MGCS006AG11F.B mgcs006aG11f.b LENGTH:512bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 512
Score = 26.3 bits (13), Expect = 7.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 64 ggttcgggattcg 76
|||||||||||||
Sbjct: 293 ggttcgggattcg 281
>MGCS002DB02F.B mgcs002dB02f.b LENGTH:422bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 422
Score = 26.3 bits (13), Expect = 7.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 28 caagccgaccatg 40
|||||||||||||
Sbjct: 115 caagccgaccatg 103
>MGCM009DG12F.B mgcm009dG12f.b LENGTH:173bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 173
Score = 26.3 bits (13), Expect = 7.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 230 cagtcaaaatggt 242
|||||||||||||
Sbjct: 108 cagtcaaaatggt 120
>MGCM008DD01F.B mgcm008dD01f.b LENGTH:481bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 481
Score = 26.3 bits (13), Expect = 7.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 26 tgcaagccgacca 38
|||||||||||||
Sbjct: 326 tgcaagccgacca 338
>MGCM004AF11F.B mgcm004aF11f.b LENGTH:272bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 272
Score = 26.3 bits (13), Expect = 7.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 198 tgctaggaggatc 210
|||||||||||||
Sbjct: 91 tgctaggaggatc 79
>MGAP007CF02F.B mgap007cF02f.b LENGTH:532bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 532
Score = 26.3 bits (13), Expect = 7.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 4 tgggcggatcggt 16
|||||||||||||
Sbjct: 318 tgggcggatcggt 306
>MGAP007BE06F.B mgap007bE06f.b LENGTH:455bp ; DIRECTION:0 ; CLONE:
n/a ; CLONELIB: n/a ; TISSUE:
Length = 455
Score = 26.3 bits (13), Expect = 7.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 198 tgctaggaggatc 210
|||||||||||||
Sbjct: 289 tgctaggaggatc 301
>GI3391850G gi3391850g LENGTH:748bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 748
Score = 26.3 bits (13), Expect = 7.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 36 ccatgtaatggga 48
|||||||||||||
Sbjct: 486 ccatgtaatggga 498
>GI3391843G gi3391843g LENGTH:713bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 713
Score = 26.3 bits (13), Expect = 7.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 134 gttccctcaatcg 146
|||||||||||||
Sbjct: 643 gttccctcaatcg 631
>GI3391801G gi3391801g LENGTH:889bp ; DIRECTION:0 ; CLONE: n/a ;
CLONELIB: n/a ; TISSUE:[]
Length = 889
Score = 26.3 bits (13), Expect = 7.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 115 tgtacctttacaa 127
|||||||||||||
Sbjct: 528 tgtacctttacaa 540
>CL83CT116CN383 cl83ct116cn383 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:2; ESTS:gi14181430,mgcs005aH0
Length = 655
Score = 26.3 bits (13), Expect = 7.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 59 gttggggttcggg 71
|||||||||||||
Sbjct: 652 gttggggttcggg 640
>CL630CT708CN1465 cl630ct708cn1465 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:6; ESTS:gi2537323g,mgns009
Length = 1757
Score = 26.3 bits (13), Expect = 7.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 168 ggggtacctgcag 180
|||||||||||||
Sbjct: 739 ggggtacctgcag 751
>CL617CT695CN1448 cl617ct695cn1448 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:3; ESTS:gi3391455g,mgcs009
Length = 1032
Score = 26.3 bits (13), Expect = 7.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 97 actaccgcacaat 109
|||||||||||||
Sbjct: 840 actaccgcacaat 828
>CL433CT502CN1136 cl433ct502cn1136 COVERAGE:0.96; CRAWID: 1;
TOTAL_ESTS:3; ESTS:mgmy004cE02f.b,mgc
Length = 509
Score = 26.3 bits (13), Expect = 7.6
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 232 gtcaaaatggttaaagc 248
||||||||||| |||||
Sbjct: 157 gtcaaaatggtcaaagc 173
>CL363CT426CN945 cl363ct426cn945 COVERAGE:1.0; CRAWID: 1;
TOTAL_ESTS:1; ESTS:gi14180667; LENGTH:7
Length = 761
Score = 26.3 bits (13), Expect = 7.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 46 ggagcgcccccgg 58
|||||||||||||
Sbjct: 327 ggagcgcccccgg 339
>CL334CT393CN873 cl334ct393cn873 COVERAGE:0.97; CRAWID: 1;
TOTAL_ESTS:33; ESTS:gi14180776,gi14180
Length = 1639
Score = 26.3 bits (13), Expect = 7.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 228 atcagtcaaaatg 240
|||||||||||||
Sbjct: 271 atcagtcaaaatg 283
>CL310CT364CN835 cl310ct364cn835 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:8; ESTS:gi14180848,gi339154
Length = 1134
Score = 26.3 bits (13), Expect = 7.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 228 atcagtcaaaatg 240
|||||||||||||
Sbjct: 185 atcagtcaaaatg 197
>CL177CT214CN557 cl177ct214cn557 COVERAGE:0.98; CRAWID: 1;
TOTAL_ESTS:10; ESTS:gi14181247,gi14181
Length = 1742
Score = 26.3 bits (13), Expect = 7.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 76 ggagagtgtcatc 88
|||||||||||||
Sbjct: 1386 ggagagtgtcatc 1374
>CL1040CT1141CN1924 cl1040ct1141cn1924 COVERAGE:0.99; CRAWID: 1;
TOTAL_ESTS:2; ESTS:mgcm002cE11f.b,m
Length = 376
Score = 26.3 bits (13), Expect = 7.6
Identities = 16/17 (94%)
Strand = Plus / Minus
Query: 156 gcactctgaaccggggt 172
|||| ||||||||||||
Sbjct: 198 gcaccctgaaccggggt 182
Database: /phillip/Ncr/Mgr_IFAFSGB_nr
Posted date: Mar 22, 2002 5:31 PM
Number of letters in database: 2,543,711
Number of sequences in database: 4717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 226
Number of Sequences: 4717
Number of extensions: 226
Number of successful extensions: 71
Number of sequences better than 10.0: 24
length of query: 260
length of database: 2,543,711
effective HSP length: 14
effective length of query: 246
effective length of database: 2,477,673
effective search space: 609507558
effective search space used: 609507558
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)