BLASTN 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/FgrNCT3P/stackpack/blast_Mgr_IFAFSGB_nr/FgrNCT3P_
1609_C10_E19ZT.seq
         (440 letters)

Database: /phillip/Ncr/Mgr_IFAFSGB_nr
           4717 sequences; 2,543,711 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CL627CT705CN1460 cl627ct705cn1460 COVERAGE:1.0; CRAWID: 2; TOTAL...    32  0.21
MGCM005AE07F.B mgcm005aE07f.b LENGTH:434bp ; DIRECTION:0 ; CLONE...    28  3.3
GI3392122G gi3392122g LENGTH:765bp ; DIRECTION:0 ; CLONE: n/a ; ...    28  3.3
CL1099CT1202CN1989 cl1099ct1202cn1989 COVERAGE:0.99; CRAWID: 1; ...    28  3.3

>CL627CT705CN1460 cl627ct705cn1460 COVERAGE:1.0; CRAWID: 2;
           TOTAL_ESTS:1; ESTS:gi3391384g; LENGTH:
          Length = 968

 Score = 32.2 bits (16), Expect = 0.21
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 400 ggcttggcggatcaag 415
           ||||||||||||||||
Sbjct: 245 ggcttggcggatcaag 260



>MGCM005AE07F.B mgcm005aE07f.b LENGTH:434bp ; DIRECTION:0 ; CLONE:
           n/a ; CLONELIB: n/a ; TISSUE:
          Length = 434

 Score = 28.2 bits (14), Expect = 3.3
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                             
Query: 32  gtactgacagcgcgagtg 49
           |||||||||||| |||||
Sbjct: 311 gtactgacagcgggagtg 294



>GI3392122G gi3392122g LENGTH:765bp ; DIRECTION:0 ; CLONE: n/a ;
           CLONELIB: n/a ; TISSUE:[]
          Length = 765

 Score = 28.2 bits (14), Expect = 3.3
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 141 caagacttttggaa 154
           ||||||||||||||
Sbjct: 135 caagacttttggaa 148



>CL1099CT1202CN1989 cl1099ct1202cn1989 COVERAGE:0.99; CRAWID: 1;
           TOTAL_ESTS:2; ESTS:mgcm004aG10f.b,m
          Length = 426

 Score = 28.2 bits (14), Expect = 3.3
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 139 ttcaagacttttgg 152
           ||||||||||||||
Sbjct: 15  ttcaagacttttgg 28



  Database: /phillip/Ncr/Mgr_IFAFSGB_nr
    Posted date:  Mar 22, 2002  5:31 PM
  Number of letters in database: 2,543,711
  Number of sequences in database:  4717
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 590
Number of Sequences: 4717
Number of extensions: 590
Number of successful extensions: 149
Number of sequences better than 10.0: 4
length of query: 440
length of database: 2,543,711
effective HSP length: 15
effective length of query: 425
effective length of database: 2,472,956
effective search space: 1051006300
effective search space used: 1051006300
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)